MmuEX0053553 @ mm10
Exon Skipping
Gene
ENSMUSG00000048921 | Zfp689
Description
zinc finger protein 689 [Source:MGI Symbol;Acc:MGI:1918381]
Coordinates
chr7:127442136-127449158:-
Coord C1 exon
chr7:127448654-127449158
Coord A exon
chr7:127448363-127448467
Coord C2 exon
chr7:127442136-127445137
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCCAGGATGCGCAGGTC
3' ss Score
-1.95
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CGCCATTACACTTTAGGGCAAGGAGGTTAAGAAGTCGGCATGGCGTTCGGGTCAATAAAATCGATAGCTGGAACCTGCCTGTGTTCTAGGCAGCGGTGGTGCAGGAGCAGCGCCGCCATCTTCCCCGAAGGCATCTTCCGGTGCCTCTCACCCAAGTTCCAGCGGGAGTTCCCTGAATAACGGTCTGTGTCGGGCCGCCCGGCCCCTCAGGCAGCCGATTCAGATTTCCTCCGGGCCTTCCCGACGGAGCTTCTAGGTCTCCGGGTCCCCGTGGCAAGGCCGGGGAGCAGGTCCGATGGCGCCACCTTCGGCTCCGCTTCTCCTGCGGGCAGTCGGAGAGGCTGGACCTACTCGGAAAAGGGGCAGGAGGCCAAGGGCCTTGAAGTTCGTGGACGTGGCCGTGTACTTCTCCTCGGAGGAGTGGGGGTGTCTGCAGCCCGCTCAGAGGACTCTGTACCGGGATGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GTCCCAAACCAGCTCTCATCTCCTGGTTGGAACGAAATACCGATGACTGGGAACCAGCAGCCCTAGATCCGCAGGAGTACCGGAGATGGGTAACATTCCAGAGAA
Seq C2 exon
AAACCAGATCCAAGCAGAAGACTGAAGAGAAGGACGTATTCCCACCTAAGGAAGCACCCCGAAAGGGGAAACGAGGGCGGAAGCCCAGCAAACCCCGGCTGATTCCCAGGCAGACATCCGGGGGCCCCATCTGCCCTGACTGTGGCTGTACCTTTCCTGACCACCTCGCCCTGGAGAGCCACAAGTGCGCCCAGAATCTGAAGAAACCCTATCCCTGCCCGGATTGTGGGCGTCGCTTTTCCTACCCATCCCTGTTGGTCAGTCACCGGCGGGCACACTCCGGTGAGTGCCCTTACGTTTGTGACCAGTGTGGCAAACGTTTTTCCCAGAGGAAAAACCTGTCTCAGCACCAGGTCATACACACAGGCGAGAAGCCCTACCACTGCCCTGACTGTGGCCGCTGCTTTCGCAGGAGCCGGTCGTTGGCCAATCACCGGACCACGCACACCGGTGAGAAGCCTCATCAGTGCCCTAGTTGTGGGCGTCGCTTCGCCTATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048921-'0-3,'0-2,1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.077 C2=0.159
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCTGTACCGGGATGTG
R:
CTTCAGATTCTGGGCGCACTT
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types