HsaEX6043238 @ hg38
Exon Skipping
Gene
ENSG00000156853 | ZNF689
Description
zinc finger protein 689 [Source:HGNC Symbol;Acc:HGNC:25173]
Coordinates
chr16:30602558-30610379:-
Coord C1 exon
chr16:30609837-30610379
Coord A exon
chr16:30609525-30609638
Coord C2 exon
chr16:30602558-30605447
Length
114 bp
Sequences
Splice sites
3' ss Seq
GATTTGTTCTCTTTCCCCAGGGT
3' ss Score
10.41
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ATAAAATCGATAGCTGGAAGCTGCCTGTGTTCCAGGCAAAGGCGGTGCGGTAGCAGCGCCGCCATTTTCCCCGAAGGCATCTTCCGGTGCCTTTCACCCAAGTTCGGGCAGGAGTTTCCTGAATAACAGCAAAAGGTTTCCGTTAGCCCCGCGGGCGACCAATTCCGATTCCCTCCGGGCCTCCCCGGCCACGCTCAGCCCTGGTCCGGCAGGGGCTCCTCGATCCCAGGGGCCGCCAGCGCCCGAGGGCCGAGGCCTGGACACGGAAGGCCGTGGCGCCGGCTTCTCGGGTCCCATGGCGCCACCTTCGGCTCCGCTCCCTGCGCAGGGACCAGGAAAGGCCAGACCCAGTCGGAAAAGGGGCAGGAGGCCGAGGGCTCTGAAGTTCGTGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGGGCTGCCTGCGGCCCGCGCAGAGGGCCCTGTACCGGGACGTGATGCGGGAGACCTACGGTCACCTGGGCGCGCTCG
Seq A exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAACACCGATGACTGGGAACCGGCTGCTCTAGATCCGCAGGAGTACCCGAGAGGGCTAACAGTCCAGAGAA
Seq C2 exon
AAAGCAGAACCAGAAAGAAGAATGGGGAGAAGGAAGTATTCCCGCCTAAGGAGGCACCCCGAAAGGGGAAGCGAGGCCGGAGGCCCAGCAAACCCCGACTGATTCCTAGGCAGACGTCCGGGGGCCCCATCTGCCCTGACTGCGGCTGTACCTTCCCTGATCATCAGGCCCTGGAGAGCCACAAGTGCGCCCAGAATCTAAAAAAGCCTTACCCTTGCCCAGACTGTGGGCGCCGCTTTTCCTATCCATCCCTGCTGGTCAGTCACCGGCGGGCACACTCCGGCGAGTGCCCCTATGTTTGTGACCAGTGTGGCAAACGTTTCTCCCAGCGCAAGAACCTCTCCCAGCACCAGGTCATCCATACAGGGGAGAAGCCCTATCACTGCCCTGACTGTGGTCGCTGCTTCCGGAGGAGCCGGTCCTTGGCCAATCACCGGACCACACACACAGGTGAAAAACCCCACCAGTGCCCTAGCTGTGGACGTCGCTTCGCCTACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156853-'4-11,'4-6,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=0.449 C2=0.155
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAAGTTCGTGGACGTGG
R:
CGGACGTCTGCCTAGGAATCA
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains