HsaINT0188127 @ hg19
Intron Retention
Gene
ENSG00000156853 | ZNF689
Description
zinc finger protein 689 [Source:HGNC Symbol;Acc:25173]
Coordinates
chr16:30620846-30621682:-
Coord C1 exon
chr16:30621158-30621682
Coord A exon
chr16:30620960-30621157
Coord C2 exon
chr16:30620846-30620959
Length
198 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GATTTGTTCTCTTTCCCCAGGGT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GGAAGCCGGCATGGCGCTCCGGTCAATAAAATCGATAGCTGGAAGCTGCCTGTGTTCCAGGCAAAGGCGGTGCGGTAGCAGCGCCGCCATTTTCCCCGAAGGCATCTTCCGGTGCCTTTCACCCAAGTTCGGGCAGGAGTTTCCTGAATAACAGCAAAAGGTTTCCGTTAGCCCCGCGGGCGACCAATTCCGATTCCCTCCGGGCCTCCCCGGCCACGCTCAGCCCTGGTCCGGCAGGGGCTCCTCGATCCCAGGGGCCGCCAGCGCCCGAGGGCCGAGGCCTGGACACGGAAGGCCGTGGCGCCGGCTTCTCGGGTCCCATGGCGCCACCTTCGGCTCCGCTCCCTGCGCAGGGACCAGGAAAGGCCAGACCCAGTCGGAAAAGGGGCAGGAGGCCGAGGGCTCTGAAGTTCGTGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGGGCTGCCTGCGGCCCGCGCAGAGGGCCCTGTACCGGGACGTGATGCGGGAGACCTACGGTCACCTGGGCGCGCTCG
Seq A exon
GTGAGGCCGGCCCCATCCGCTGCCGCGGGGCGCGAAGGGATGCAGGAGCCGGAGAGGGTGTAGGCAGGGAGGCCACGGTCCTGGCAGGCGACCAGGTTGTCAGGGGAGGTGGGCAGGGGCTTAGCAGGAGGTGCCGTCGGGGAGATACTACTCGGCGTGATCTAGGAGCTGGCCTTCTGATTTGTTCTCTTTCCCCAG
Seq C2 exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAACACCGATGACTGGGAACCGGCTGCTCTAGATCCGCAGGAGTACCCGAGAGGGCTAACAGTCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156853-ZNF689:NM_138447:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=NA C2=0.449
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGACCCAGTCGGAAAAG
R:
CGGGTACTCCTGCGGATCTAG
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)