MmuINT0070756 @ mm10
Intron Retention
Gene
ENSMUSG00000066647 | Gm5113
Description
predicted gene 5113 [Source:MGI Symbol;Acc:MGI:3644651]
Coordinates
chr7:30169875-30175946:+
Coord C1 exon
chr7:30169875-30170214
Coord A exon
chr7:30170215-30175850
Coord C2 exon
chr7:30175851-30175946
Length
5636 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATTTCTTCTCCCATTAACAGGAC
3' ss Score
11.02
Exon sequences
Seq C1 exon
AGGCACTGCGGGTTGCTTATCCGTCTCCCACGCACAAACCTGGCCGCCTCTTGTGATTTGGGGTTTCTTAGAGTAGATTGTTGTCACTTGGACCCAAATAAGCTCACGCCTGGTAAGATGTTTGGAGTGGGGACTTCCTCTTTGGTACTTCACGGGCGGCGTCTCAATAATACACTGAGCCCAGACCCCAAGGTGAAAGGACACCATCTTTGTCCGGGGCTGATGTGGCTATGGACTACGTTTCCCAGAGTCCATAGCGAGCTGACATTGTAGCTCAACTTTGATGAAACCTTTACCTTTGGCTGAAGCAGGATGCGCGCGCCTTCTACTGAGACCCAAG
Seq A exon
GTAAATGGTCTGGGGAGTACTGAACGGGGGTGGGGAACAGGCGTGTCCTGAACGGGGTTGTGCACGCTGAAGCAGGACTGGGCTGCGGGATTCTAATTGTGGTTTTGATTGTGGTGGTGACCGGTTGTCAGTGCTTACAAGTAGTGTGCTGTTGTAATCACCTGTCTCCAAGGTGTATATCTGATTGTTGCTGTGCAAACATATGTGATGTTATGTGTTCCGGGATCTTGTGGTTGTGGAAGTGGTATCCCGTGGTCCTGTAGTGTGTTGTGTGCTCGATAACCTTTATTCCTGGGGTTGTGTGGATATAGTTGTAGCTGTGACTGTGTATCTCTGGGTTAAGTGACCTTGTGTAGTACTGTGTGCAGTGTTCTGTGTCCGTGGCTCTGCGTCGGCAGTGCGTGAGTATCCTTGTGTTCTTGGAGAGAAGGGAGAAAGAAGGAGGAGGACTTTGTGACAGTGTGTAATACTGTGTGTATGCGGGTGTGGACTATCTTTGCTAAAGAGTGACTGGCCCCTGAGTGAATGTTCAGTTATGGCTGGATGATGCAGAGTACTGTGCCTTCTGCGTGCCACCATGTGTGATTGTGACTATGTAAGGAGGACCTTTAGGGATGTTAGGGAAGTGATTGTACCACAGTGGCAAGCAAACTGACTGGGATGCCTAGGTGGGTAAAGTTCTTGTGGCACAAGTCAGTTGTCATACTGTGTTTGTAATTATCCTGTAATCCAAGCTCCTACAGAATTCAGAGACAAGCATTTCCAAAACCTCTCAGATGAACTAGCTGGGAGTGTGTAGCAGTGATCAGACTACAAGGTAGAAGGCTAGAACCAACACCCAAGACTCTACTCTGCCCTCCACAAAAATGGCATTGCACACACATACCTGAATATGTGCACACACACAAAGTTAAAAAAATTATTTCTAGGGCTGGAGAGATGACTCAGTGGTTAAGAGGACTGGCTGGACTTCCAGAGGACCAGGTTTCAGCACCCATGTGGCAGCTCACAGCTGTCTGTAACTCTTGTTCCAGGGGATCCGACTCCCTCATACAAGCATACATGCAGGCAAAACACCAATGTACATACAATAAAAATAAAATAAATTATTAAAAATTTGTTTCTTAGAAAGTGAAGAGTTGGTGTGTGGATGTTTTCATGTGACATATCTTGCAGCAGCCAAATGTAGTGGGTCTGTGACTACTGTTTTGGCCCCAGCAGGTGCCGTAAAGTTTGGGCAGATTCTGGCCCTGGACAATAGTGACCTCAGTTTTACAAGGTGACACTGAGTTTGGACTGAGTGCCCAGCCATGTCTGACCTCCATCCCCTGAACACCAGGATAGAAGAACAGCTATCCAAAAGTACCCTGCTCACTCATGTTTCCTTTCTTCCAACCCTTTTCTAAGAGGATGATGCTGAGCCAAGACTATACAGCTCAGTAGTTAACTATTGACTGTCCAAAGCCAAATTCAAAAAGCATCCCATTTTATTCTCCTTTCCCTGAACCTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGAGGAGAGGGTTTTTTTCATGAAAGGGTGTCTTGGTTAGGGTTCTACTGCTGTGAACAGGCACCAAGGCAACTCTTATAAGGACAATATTTCATAGGGCTGGCTTACAGGTTCAAAGGTTCAATCCATTATCATTAAGGTGGGGAGCTGGGTGGTAGTGGCGCACACCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCAAAAAAAACCAAAAGCCAAAACAAAACAAAAACAAGGTGGGGGCATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAAAGTTCTACATCATCTTCTGAAGGCTGCTTAGAGAAGACTGACTTCCAGGCAGCTAGGATGAGGGTATTAAAGCCAACACACACAGTGACACACCTACACCAACAAGGCCACACCTACTCCAACAAGGCCACACTACCAAAGAACAAGTGCTATTCCCTGGGCCAAACATATTCAAACCACCATACAGGGTCTCTCTGTGTAGCCTTGGCTATCCTGGAACTAACTCTGTAGACTGGGCTGGCTTCAAACAGAGAACTAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCACGTGATCTGTGAGCCTCTGTAATACAGCCCTAGCATTCCCTCTGTTACCGAAGATCATTAGTTATTCTAGTGATTTAAATACACTCTGTCTGGAGCCATTTCCACCTGTATCTCTTGTTCTTTTATTTTCTTCCCATGGTGGGACCGGGCAGGCAAGCACAAGATTCTTGCTATGTTACCCAGGCCTGAGATCTCAGATTCAGAACTGAGCTTGTCTATCAGTCTGTCAGTGTACTGGGGGCTTAACTCCTACTTTTCCAGGACTCTATTTATCCGGAAGAAGTCAGAGTAGATCAGAATGGCACGGCCCATCAGGTAGCTTGAAAGTTCATTTTATTTATGTGTTTGTTTGTTTTGGCTTTTTGAGACAGGGTTTCTCTGTGTAGAGTCTGGAACTCCCTCTGTAGATCTGAAACTCACAGAGATCTGCCTGTCCCTGCCTCCCAAGTGCTGGAACTAAAGGGATTGTCTACCACTGCCCAGACTTTGTTTTCAGGCAGGCAGGCAGGCAGGCAAGCAGGCAGTTAGTCAGTTGGTTGGTTGGTTGGTTGGTGGTGGTGGTGGTGATGTGGTGTGCAAGCTGCTGTACAGTGTGGAGGACTGAGAATGGTAGCAGGAGTCAGTTCTCTCCTTATATCACGTGGAACCCAGGATCAAACTCAGGTCGTCAGATTTTGCAGCAGGTGACCTTACCTGCTGAGCCATCTTTCCTAGCCCCATAACTCCTCCTAACCCTTCAGAACATATGAACACCTGTCCTCTTTATGCCAAAATGTCTGCTCTCGGGGAGCGAGTGATGGGTCCCCAACCCCATCGGTGGCTCCCTCTTCTCAGCATCATATACAGTGTTGTCACAGAGGAGCAGAGGAAAGGAATACCTTCTCTTGAAAAAGATGATAGCTTATTTTCTCATAACCATTAATGGGGACCACAGAGGAGACGACGGTCTTTTCCAGTGACTTTCCTATACTGATTTATTTCACTCCCTCTTAAAAAACAAAACAAAAGGAAAGAAAGAAGAAGCCTATTTCATGGGCTGGAGAGATGGCTCCCTGCTTGGGGACACTGGTTTTACTTCCAGAGGCTCTGCATTCGTGTCCCACACCCACATGTTGGCTCTCAACCATCGAACTGCAGTTCCAGGGGATCAGAAGCCCTGATCTGACTTCCACAGGTATCAGGCACGCACATGGTGCACAGACATACATGCAAAACACCCATACACATAAACTAAAAACCATATTTCCTGCTGTCAGAAACGGTATACAAAACATGTCTGTCACACATACAAAAACATGTCCCCCATAAGCTGATTATCATGGTGCACGCCTTTGATCCCAGCACTTGGAAGGCAGAGGCATGTAGATCTCTGAATTCAATCAAGGCTAGCCTACTCTCTAGAGTTCCAGGACAGCCAGGACTACACAGGGAAACCCTGTCTTGAAACGTCCCTCTCTCCCTACACAGAAACCAAACCAAACAAACAAAATCCCACATGTCTATCGCACGCATATGGTATGAGAAAATAAACACCGATATATTCGCCACCCAAATGTGCCATCTAACATCCTTACAAGTGGAGTGACTGCTTTCTATTTGCATGCAGCCATTGATACTTTTTTGGGGAGAAGGGTTGTTTTAAGATGGGTTAGCAGAGGCTGCTTGCTAACCCGGCTGTGTGTGTAGCCAAAGATGACTTTGAACTCCTGCTTATACCCCACTCTGCCAAGTTCTAGGATAATAGGTGTACGTCACCACACCCGAGCATGGTCTCAGTAACTTATGGGACCCTGCTCAGCTAGATTTTGTTTATTTTCCAGTCTGAATGTGAATCAGGAGAGTCCTGCTCCTCAGAGGAGAGTATTGATTGACACTTGATCATGTTCTTAGCTTGTGGTGCAGACCGAAAGCTAGAGCTTCCCATATCCCATGGTGCCTTTCTTCATCTCTGCATTGTAAAGACGTTTTCCTGAGTAGATCAGCTTGGGAAACCTGAACCTTTTCATCAGTTATGGTCTCACTGGAAATGGAACAACTAGCCAGTCTCCAGAGGCAGAGGCAGGAGGATCTCTGGGTTTACATAGTGAGTTCTGGGCCAGTCAGAGTAACACAATGTAACCCTATCTCAAAGAAAATGAAAAGAAAAAGGGAGGAGACAAATATATTTGTTTGTCTTGCTTTGCTTTTGTTGCTTTAGATTTATTTATTTATTTATCTATTTTATGCATATGAGTACACTGTCACTGTCCTCAGACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGAACCTCTGAAAGAGCAGCCAGTGCTCTTAATCGCTGAGACATCTCTCCAGCCCAAGATACATATTTATAAGTACAGCCATCGCTACATAGTGAGATCCTGTATCAAAAATTAAAGAAAAGAAACAATTAATTCACTAATAGTGTGTGAGTGCGTTGTTTCAGGGGACAGTGATCTTTGGGGTTGTGGCTGTAGAGTTGTCTGGGGAGTGGAAGTGCATGGAGCCTGCTCAGAGGGACTTGTACAGAAATGTGACGTTGAAGAACTTCAGTTTCCTGGTCTCACTAGGTAAGGCCTAGAGCACCCAGGACCACATAGGAAACGGGACATCCTGGGACCAAAGCAACAGAAGTTTGCTGAGCCATCTCAATCTTAAGATGAAGGCAGGCTGGTCCATCACCTGCCTTGCCTACTTGCAATTAACATCGATAATAATAAATATTGTTACTATTTTGATTCCTTGGAGACCAAAAGCTAGGGTTTGAATTTTAATTATTTATAAAAAGGCTCTTACCACATTTATTTCTGCGTGATGGAGGAGATGGTATAAGTGTACCACTGAATGCGTCTTGAGGTCAGAGGACATCTTTCAGGACTTGGTTCTCTCTTTGCACCATGTGGACCCTGGGGATCAAACAGGTTGTCAGGCTGGGCAAGAACTTTACCCTGCTCAGCCATCCTACCAGCCCTAGAGTTTGAATTTTATTTTATCTTATTTTTTTATTTGTTTGTTTGTTTGTTTGTTTTGAGACAGGGTCTCCCTCTATAGCCCTGGCTGTCCTAGAACTCACTATGTAGAACAAGCTGGCCTCAAACTCACAGAGATTAAAGATATGTCACCATGACTGGCCAGAGTTTGACATTTAATGTTGGTTATTATTTCGCCTTAATGTGTGTGTGTGTGTTTATAAGGGTGTTGGATCTCCTGGAGCTGGACTTACAATTGTGGGCTTCCATGTGGGTGCTGGGAATTGAACCTGGATACTCTGGAATAGAAGCTAGTGCTTTTAACCACTGAGCCATCTCTCCAGCCCCCAGAGTTTGAAATGTAAACAGTATAATCATGCTTCATTTCTTCTCCCATTAACAG
Seq C2 exon
GACTTGTCATTTTTAAGCCTGATGTCGTCTTCTTATTGGAGCAAGGGAAAGAGCCATGGACGGTTACAAATTATATGACAAATCCTTGGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066647:ENSMUST00000209028:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types