MmuINT0070756 @ mm9
Intron Retention
Gene
ENSMUSG00000066647 | Gm5113
Description
predicted gene 5113 [Source:MGI Symbol;Acc:MGI:3644651]
Coordinates
chr7:30954941-30960965:+
Coord C1 exon
chr7:30954941-30955233
Coord A exon
chr7:30955234-30960869
Coord C2 exon
chr7:30960870-30960965
Length
5636 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATTTCTTCTCCCATTAACAGGAC
3' ss Score
11.02
Exon sequences
Seq C1 exon
CTCTTGTGATTTGGGGTTTCTTAGAGTAGATTGTTGTCACTTGGACCCAAATAAGCTCACGCCTGGTAAGATGTTTGGAGTGGGGACTTCCTCTTTGGTACTTCACGGGCGGCGTCTCAATAATACACTGAGCCCAGACCCCAAGGTGAAAGGACACCATCTTTGTCCGGGGCTGATGTGGCTATGGACTACGTTTCCCAGAGTCCATAGCGAGCTGACATTGTAGCTCAACTTTGATGAAACCTTTACCTTTGGCTGAAGCAGGATGCGCGCGCCTTCTACTGAGACCCAAG
Seq A exon
GTAAATGGTCTGGGGAGTACTGAACGGGGGTGGGGAACAGGCGTGTCCTGAACGGGGTTGTGCACGCTGAAGCAGGACTGGGCTGCGGGATTCTAATTGTGGTTTTGATTGTGGTGGTGACCGGTTGTCAGTGCTTACAAGTAGTGTGCTGTTGTAATCACCTGTCTCCAAGGTGTATATCTGATTGTTGCTGTGCAAACATATGTGATGTTATGTGTTCCGGGATCTTGTGGTTGTGGAAGTGGTATCCCGTGGTCCTGTAGTGTGTTGTGTGCTCGATAACCTTTATTCCTGGGGTTGTGTGGATATAGTTGTAGCTGTGACTGTGTATCTCTGGGTTAAGTGACCTTGTGTAGTACTGTGTGCAGTGTTCTGTGTCCGTGGCTCTGCGTCGGCAGTGCGTGAGTATCCTTGTGTTCTTGGAGAGAAGGGAGAAAGAAGGAGGAGGACTTTGTGACAGTGTGTAATACTGTGTGTATGCGGGTGTGGACTATCTTTGCTAAAGAGTGACTGGCCCCTGAGTGAATGTTCAGTTATGGCTGGATGATGCAGAGTACTGTGCCTTCTGCGTGCCACCATGTGTGATTGTGACTATGTAAGGAGGACCTTTAGGGATGTTAGGGAAGTGATTGTACCACAGTGGCAAGCAAACTGACTGGGATGCCTAGGTGGGTAAAGTTCTTGTGGCACAAGTCAGTTGTCATACTGTGTTTGTAATTATCCTGTAATCCAAGCTCCTACAGAATTCAGAGACAAGCATTTCCAAAACCTCTCAGATGAACTAGCTGGGAGTGTGTAGCAGTGATCAGACTACAAGGTAGAAGGCTAGAACCAACACCCAAGACTCTACTCTGCCCTCCACAAAAATGGCATTGCACACACATACCTGAATATGTGCACACACACAAAGTTAAAAAAATTATTTCTAGGGCTGGAGAGATGACTCAGTGGTTAAGAGGACTGGCTGGACTTCCAGAGGACCAGGTTTCAGCACCCATGTGGCAGCTCACAGCTGTCTGTAACTCTTGTTCCAGGGGATCCGACTCCCTCATACAAGCATACATGCAGGCAAAACACCAATGTACATACAATAAAAATAAAATAAATTATTAAAAATTTGTTTCTTAGAAAGTGAAGAGTTGGTGTGTGGATGTTTTCATGTGACATATCTTGCAGCAGCCAAATGTAGTGGGTCTGTGACTACTGTTTTGGCCCCAGCAGGTGCCGTAAAGTTTGGGCAGATTCTGGCCCTGGACAATAGTGACCTCAGTTTTACAAGGTGACACTGAGTTTGGACTGAGTGCCCAGCCATGTCTGACCTCCATCCCCTGAACACCAGGATAGAAGAACAGCTATCCAAAAGTACCCTGCTCACTCATGTTTCCTTTCTTCCAACCCTTTTCTAAGAGGATGATGCTGAGCCAAGACTATACAGCTCAGTAGTTAACTATTGACTGTCCAAAGCCAAATTCAAAAAGCATCCCATTTTATTCTCCTTTCCCTGAACCTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGAGGAGAGGGTTTTTTTCATGAAAGGGTGTCTTGGTTAGGGTTCTACTGCTGTGAACAGGCACCAAGGCAACTCTTATAAGGACAATATTTCATAGGGCTGGCTTACAGGTTCAAAGGTTCAATCCATTATCATTAAGGTGGGGAGCTGGGTGGTAGTGGCGCACACCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCAAAAAAAACCAAAAGCCAAAACAAAACAAAAACAAGGTGGGGGCATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAAAGTTCTACATCATCTTCTGAAGGCTGCTTAGAGAAGACTGACTTCCAGGCAGCTAGGATGAGGGTATTAAAGCCAACACACACAGTGACACACCTACACCAACAAGGCCACACCTACTCCAACAAGGCCACACTACCAAAGAACAAGTGCTATTCCCTGGGCCAAACATATTCAAACCACCATACAGGGTCTCTCTGTGTAGCCTTGGCTATCCTGGAACTAACTCTGTAGACTGGGCTGGCTTCAAACAGAGAACTAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCACGTGATCTGTGAGCCTCTGTAATACAGCCCTAGCATTCCCTCTGTTACCGAAGATCATTAGTTATTCTAGTGATTTAAATACACTCTGTCTGGAGCCATTTCCACCTGTATCTCTTGTTCTTTTATTTTCTTCCCATGGTGGGACCGGGCAGGCAAGCACAAGATTCTTGCTATGTTACCCAGGCCTGAGATCTCAGATTCAGAACTGAGCTTGTCTATCAGTCTGTCAGTGTACTGGGGGCTTAACTCCTACTTTTCCAGGACTCTATTTATCCGGAAGAAGTCAGAGTAGATCAGAATGGCACGGCCCATCAGGTAGCTTGAAAGTTCATTTTATTTATGTGTTTGTTTGTTTTGGCTTTTTGAGACAGGGTTTCTCTGTGTAGAGTCTGGAACTCCCTCTGTAGATCTGAAACTCACAGAGATCTGCCTGTCCCTGCCTCCCAAGTGCTGGAACTAAAGGGATTGTCTACCACTGCCCAGACTTTGTTTTCAGGCAGGCAGGCAGGCAGGCAAGCAGGCAGTTAGTCAGTTGGTTGGTTGGTTGGTTGGTGGTGGTGGTGGTGATGTGGTGTGCAAGCTGCTGTACAGTGTGGAGGACTGAGAATGGTAGCAGGAGTCAGTTCTCTCCTTATATCACGTGGAACCCAGGATCAAACTCAGGTCGTCAGATTTTGCAGCAGGTGACCTTACCTGCTGAGCCATCTTTCCTAGCCCCATAACTCCTCCTAACCCTTCAGAACATATGAACACCTGTCCTCTTTATGCCAAAATGTCTGCTCTCGGGGAGCGAGTGATGGGTCCCCAACCCCATCGGTGGCTCCCTCTTCTCAGCATCATATACAGTGTTGTCACAGAGGAGCAGAGGAAAGGAATACCTTCTCTTGAAAAAGATGATAGCTTATTTTCTCATAACCATTAATGGGGACCACAGAGGAGACGACGGTCTTTTCCAGTGACTTTCCTATACTGATTTATTTCACTCCCTCTTAAAAAACAAAACAAAAGGAAAGAAAGAAGAAGCCTATTTCATGGGCTGGAGAGATGGCTCCCTGCTTGGGGACACTGGTTTTACTTCCAGAGGCTCTGCATTCGTGTCCCACACCCACATGTTGGCTCTCAACCATCGAACTGCAGTTCCAGGGGATCAGAAGCCCTGATCTGACTTCCACAGGTATCAGGCACGCACATGGTGCACAGACATACATGCAAAACACCCATACACATAAACTAAAAACCATATTTCCTGCTGTCAGAAACGGTATACAAAACATGTCTGTCACACATACAAAAACATGTCCCCCATAAGCTGATTATCATGGTGCACGCCTTTGATCCCAGCACTTGGAAGGCAGAGGCATGTAGATCTCTGAATTCAATCAAGGCTAGCCTACTCTCTAGAGTTCCAGGACAGCCAGGACTACACAGGGAAACCCTGTCTTGAAACGTCCCTCTCTCCCTACACAGAAACCAAACCAAACAAACAAAATCCCACATGTCTATCGCACGCATATGGTATGAGAAAATAAACACCGATATATTCGCCACCCAAATGTGCCATCTAACATCCTTACAAGTGGAGTGACTGCTTTCTATTTGCATGCAGCCATTGATACTTTTTTGGGGAGAAGGGTTGTTTTAAGATGGGTTAGCAGAGGCTGCTTGCTAACCCGGCTGTGTGTGTAGCCAAAGATGACTTTGAACTCCTGCTTATACCCCACTCTGCCAAGTTCTAGGATAATAGGTGTACGTCACCACACCCGAGCATGGTCTCAGTAACTTATGGGACCCTGCTCAGCTAGATTTTGTTTATTTTCCAGTCTGAATGTGAATCAGGAGAGTCCTGCTCCTCAGAGGAGAGTATTGATTGACACTTGATCATGTTCTTAGCTTGTGGTGCAGACCGAAAGCTAGAGCTTCCCATATCCCATGGTGCCTTTCTTCATCTCTGCATTGTAAAGACGTTTTCCTGAGTAGATCAGCTTGGGAAACCTGAACCTTTTCATCAGTTATGGTCTCACTGGAAATGGAACAACTAGCCAGTCTCCAGAGGCAGAGGCAGGAGGATCTCTGGGTTTACATAGTGAGTTCTGGGCCAGTCAGAGTAACACAATGTAACCCTATCTCAAAGAAAATGAAAAGAAAAAGGGAGGAGACAAATATATTTGTTTGTCTTGCTTTGCTTTTGTTGCTTTAGATTTATTTATTTATTTATCTATTTTATGCATATGAGTACACTGTCACTGTCCTCAGACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGAACCTCTGAAAGAGCAGCCAGTGCTCTTAATCGCTGAGACATCTCTCCAGCCCAAGATACATATTTATAAGTACAGCCATCGCTACATAGTGAGATCCTGTATCAAAAATTAAAGAAAAGAAACAATTAATTCACTAATAGTGTGTGAGTGCGTTGTTTCAGGGGACAGTGATCTTTGGGGTTGTGGCTGTAGAGTTGTCTGGGGAGTGGAAGTGCATGGAGCCTGCTCAGAGGGACTTGTACAGAAATGTGACGTTGAAGAACTTCAGTTTCCTGGTCTCACTAGGTAAGGCCTAGAGCACCCAGGACCACATAGGAAACGGGACATCCTGGGACCAAAGCAACAGAAGTTTGCTGAGCCATCTCAATCTTAAGATGAAGGCAGGCTGGTCCATCACCTGCCTTGCCTACTTGCAATTAACATCGATAATAATAAATATTGTTACTATTTTGATTCCTTGGAGACCAAAAGCTAGGGTTTGAATTTTAATTATTTATAAAAAGGCTCTTACCACATTTATTTCTGCGTGATGGAGGAGATGGTATAAGTGTACCACTGAATGCGTCTTGAGGTCAGAGGACATCTTTCAGGACTTGGTTCTCTCTTTGCACCATGTGGACCCTGGGGATCAAACAGGTTGTCAGGCTGGGCAAGAACTTTACCCTGCTCAGCCATCCTACCAGCCCTAGAGTTTGAATTTTATTTTATCTTATTTTTTTATTTGTTTGTTTGTTTGTTTGTTTTGAGACAGGGTCTCCCTCTATAGCCCTGGCTGTCCTAGAACTCACTATGTAGAACAAGCTGGCCTCAAACTCACAGAGATTAAAGATATGTCACCATGACTGGCCAGAGTTTGACATTTAATGTTGGTTATTATTTCGCCTTAATGTGTGTGTGTGTGTTTATAAGGGTGTTGGATCTCCTGGAGCTGGACTTACAATTGTGGGCTTCCATGTGGGTGCTGGGAATTGAACCTGGATACTCTGGAATAGAAGCTAGTGCTTTTAACCACTGAGCCATCTCTCCAGCCCCCAGAGTTTGAAATGTAAACAGTATAATCATGCTTCATTTCTTCTCCCATTAACAG
Seq C2 exon
GACTTGTCATTTTTAAGCCTGATGTCGTCTTCTTATTGGAGCAAGGGAAAGAGCCATGGACGGTTACAAATTATATGACAAATCCTTGGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066647-Gm5113:NM_001033540:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: