BtaALTD0024857-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65665856-65667293:-
Coord C1 exon
chr18:65667193-65667293
Coord A exon
chr18:65667007-65667192
Coord C2 exon
chr18:65665856-65665965
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCCTACTTTTGTTATTAGGTG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GGAGAGCTGGCGCCTACACTTGCGCCTGGCTCGCCTCCAGGGCAGGTCCCTTGGCCCGCCTCTGGCTTCGCGGAGGCGCTGGATCGACTGGGAGGGCCCGG
Seq A exon
GTGAGCCCCGCGCGTCGGGCCTTTGTCCCCCGGGCGGGAACCCTAAGCTCACGGCCGAGCCGGGACGAATGTGACCGCAACAAAAGCCGAACGCCCTCGGCGAAGCGAGCGCGAGCTTGTCTAGCTGCCCGCTGAGAGCAGGGGTCACCGGCCAGCAGGGGTGGGAGGCCGGCGGCTGCGATCCAG
Seq C2 exon
GTGGGTTTTGCAGTTGGTTTTCAATAATCACCCAAATCCACTGCTCCTCGGCGAGCGTCTGGTGGATTAATCCTGCAAGATGGCTGCCATCAACCCGTGGGGTTCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTGGCGCCTACACTT
R:
CCCCACGGGTTGATGGCA
Band lengths:
202-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development