BtaINT0165785 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65665856-65667374:-
Coord C1 exon
chr18:65667007-65667374
Coord A exon
chr18:65665966-65667006
Coord C2 exon
chr18:65665856-65665965
Length
1041 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCCTACTTTTGTTATTAGGTG
3' ss Score
8.66
Exon sequences
Seq C1 exon
CTGAAGTGAAGCGGTCGCCCGGGCGGTGGGGTTATTACTGTTGCCGCTGCCGCCGGCCCGGAGGATAGGGAGAACGGGCGGGGAGAGCTGGCGCCTACACTTGCGCCTGGCTCGCCTCCAGGGCAGGTCCCTTGGCCCGCCTCTGGCTTCGCGGAGGCGCTGGATCGACTGGGAGGGCCCGGGTGAGCCCCGCGCGTCGGGCCTTTGTCCCCCGGGCGGGAACCCTAAGCTCACGGCCGAGCCGGGACGAATGTGACCGCAACAAAAGCCGAACGCCCTCGGCGAAGCGAGCGCGAGCTTGTCTAGCTGCCCGCTGAGAGCAGGGGTCACCGGCCAGCAGGGGTGGGAGGCCGGCGGCTGCGATCCAG
Seq A exon
GTGAGGTCCGCCGTTACCGGGACGGGCTGTGAGCCTCGCACCCACAGCGGGAGTGCGGAGGAAGTCTGGGATGAGAGGCCAGAAGGCAGGTGGCGAGGACGCCTCCGAGGCCGTCCTTAGGAGTCCACCTTGTCTTTCCCGACGGGCGTTTCTCCTGAGAACCCGTTCTCATTTGTCATAGAGGGAAGTCAAAAGTGACCTGGGAACAGCCCGGGCCTCCTTTAAAGGTGCAGTGACCGGATGACTTGGTCAAGTTGCAAACAAGCGTGCAGAATATTTAGTGTGCCAACTTGGAGTTCGGGCGCAGATCCAGGTGCTCCCGGTGCCCATTGGGCGTTCCAGTGCTTTATACACGCTCCCAGGAATTCGCAGAGCTCTGCCAGTTGGCGTTGGTGCCCTCCGAGAGGTCGCAGAACTTGCATAAAAGTCTAGAATTTAGGGGGTTGGGTTGGTGTGGCCTCCAAATCTGGTTTTCTGTTGGCCCCTGCACCAAGAGACAGATTTTTTTTTTCCTACCTAAGATTTACATAACTTAAAATTAACTATTTTAACGTACAAGTCCGTGGGTTTCTTGTGCGTTCAGAGCGTTTTGCAGTTATCACCACTATATAATTCCAGAACATTTTCATCACCCCTCCCCCCCGCAAAAAAAACAAAACAAAACCAACCCACCCTGAACCATTAAGCTGCCACTCGCCCGTTCTTCCCTCCCCTCAGCTCTAGGCAACTACTTACATATGAATATTGTAGGTAGGTTTTACAACAACTTTTGTTAAATCAATAGAAAAGCTACCTCTTCGTTGTCAGTACCCGTCTCATGAGAACTGTAAACAAATTTCTCCCCCCTCATCCTGGACCATGCCCTTTTTTCAGCTAACCCGAGTCATTCTTCATTTTTCTTCAGGAATTTGTTTTTGACTTGTAAATTGTTTTCTTTCAGTGCTCTGTAGAAGTCTTTTATTGTTTTTGTGGATGTGTTCTCCTTATTCCCACAGTCTTTGAGAAAAACCATTTTTTGTCTTTTCCTACTTTTGTTATTAG
Seq C2 exon
GTGGGTTTTGCAGTTGGTTTTCAATAATCACCCAAATCCACTGCTCCTCGGCGAGCGTCTGGTGGATTAATCCTGCAAGATGGCTGCCATCAACCCGTGGGGTTCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456:ENSBTAT00000004486:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATAGGGAGAACGGGC
R:
GAGGAGCAGTGGATTTGGGTG
Band lengths:
358-1399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development