HsaINT0187816 @ hg19
Intron Retention
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:25879]
Coordinates
chr19:58512657-58514714:-
Coord C1 exon
chr19:58514148-58514714
Coord A exon
chr19:58512739-58514147
Coord C2 exon
chr19:58512657-58512738
Length
1409 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTTTCACTTTTGTCACTAGGTT
3' ss Score
10.4
Exon sequences
Seq C1 exon
GAAAACTCACAGGGTGCGTCGCTGGTAACCCATGCTCCCATAAAGCCTGGCCTCTGGAAAGAGACTTGGGAACGAGCCCTGACGTTCTCAGCCGTCGAGCTTCACAGAGAAGGGTAGCTCGAATTAGGTTCCTTATCTTAAAGAGAATAACAGCAGTCACTTTCTCACAATCTTGCGAACGCCAAATGGAAGGATCCCTCGAGAGCGCTGAGAACTCGCCGAGCTCCTCCCGGGAAACCCGGTACCACGAGGCGCCATTTTGCGGATGGGCAAACCGAGGCCCGCGGGGCCGCGACTTACCCAGGCCTTTTTGCAGTGGGAGGCGACGGTGGAGGAGGGTGGTCTGGGACCGGGACAACAAAGTCCATCCTGCCGCCGGCTTCGACGCAGGTGCCAGAAAGGTCCCAACCCCGCCCAGGCAGGGCGAGGCGGCGCGGCCCAGGAACCTGTCATGGCGGCGCCGCTGCCCGACGCCGGAAGTGCCCGCCTGGAACTACAGCTCCCAGCAGACCCCGCGGCGCGCTCCGGTCGACGCCGGGGAAGCAGCCGCCATTGTCCGCGGCTGAG
Seq A exon
GTGAGGCCTTTGCTCAGGCTGTGGGGCCGCCGTAGCTGCGGGGCTTGGGGGGTCAGGAGAGCCGGCTGGGAGAGGCGGCGTCAGGGTGGGTCCTGCGCCTGCCCTTTCCGCGCCGGCTTTGCGCCGTCGTTGCCGTCGGTTCTCCAGCCAGCAGCCTGCCTCCGGCCTCCCGCCTCCGGGCGTTCTTCGTTTTCTGGTCGGACGGGCCTGGGTGAACTCTGCTGCACGTCGGCTCCGCGGGCCTTTGTCCCCGAGGCCGCGCCGGGAGCTCCCAAGCGCACTCCTGGGCCGGACCTCGGCGCGGGACAAAAGCCAAACGCCCCAGGCGGGCAGACCCCGATCCTGCTGCGCCGCCTTCAAGGGGGACCGCCGGCCGCGAGCCAGGTGAGGCCGGGACGAGCTTTTGCAGCGTCGCGGCCGCGTCGGTCTTGAGGAGGAAATTTGGGTCGGGAGCTCTGGAAGCAGGTGATAAGGATGCTTCTGAGGCCATTGATGGGACGAATAACCCCGTTCGTTCCCCAGCCGTCGTTTCTCCCCCTGCCAGTTCACACAAAGCACTGTGAAGGACGTCAGACCTGGGTTGGAAACAGCTCCGGGTTCCCTTAAACATGCAGTGACGGCGGCGGTCACTGTCAAGTTGCAAATAATGGTGCAAAGTACGGTTTGCATTCTGCGTTTTCGCGCTGATTCCGGTGCTCCTGAGGCCCACTGTGTGTTCTAGTGCTTTATACACATACCCAGGAATCCATTCGAGAGGTTGCTGACTTGTACAAAGATCTGGAACCTGAGGAGTTAGGGGTCTGGGCGCCAGGCCCATCTCTAAGTCCTCCACACACACACAAGCTTAGGCTTAGTAAATCTTGGAGGTGAATTTTTTTTGGAGGTGGGATTAAATTTGCATAACATAATGTTCACTTTAAGCACTTAAAAGTGTGCAATTCACCGGTTTTATTGTATATTAATAAAGTTGTGCAATCATCCCCATTATCTAATTTTAGAACATTTCATCACCCCACAAAGAAACCCTTGTTCCCCTTAAGCAGTCACTCCCCATTTCATTTTTCCCCCAGCTCTAGGCAACCACTAATATATGAGGATTGCAAGTTGATTTTACAATAATTGTCAGATTAATCCAAAAGTTCCATCTGTGTTGTGACTGGCTGTCTCTTGGGAATAGCTGACAAATTTGTACCCTCTCATTCAGGATCATGCTCTTTTTTCCAGCTTATGCAAATTACCTTTCATTTCTCTCCAGGAATTGTGTTACTTTTTTGACATGTAAATTCTCTTTTCTTACGATGCTCCTTACAAGTTTTTTTGTTGCTTCGGTGGATGGATTCCCTTCTTTGTTCCCACTTGGTCTTCTGTGAGAAAGGACTAGTTTTGTCTTTTTTCACTTTTGTCACTAG
Seq C2 exon
GTTGGGATTTGCTGTGTTCCTGGGCAGGTGCCTGGTCAATCAGTCCTCGGGATGGCAGCCATCAACCCGTGGGCCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704-ZNF606:NM_025027:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACGAGGCGCCATTTTG
R:
CCAGGAACACAGCAAATCCCA
Band lengths:
348-1757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)