HsaALTD0007476-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:25879]
Coordinates
chr19:58512657-58514248:-
Coord C1 exon
chr19:58514148-58514248
Coord A exon
chr19:58513764-58514147
Coord C2 exon
chr19:58512657-58512738
Length
384 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTTCACTTTTGTCACTAGGTT
3' ss Score
10.4
Exon sequences
Seq C1 exon
CCCGACGCCGGAAGTGCCCGCCTGGAACTACAGCTCCCAGCAGACCCCGCGGCGCGCTCCGGTCGACGCCGGGGAAGCAGCCGCCATTGTCCGCGGCTGAG
Seq A exon
GTGAGGCCTTTGCTCAGGCTGTGGGGCCGCCGTAGCTGCGGGGCTTGGGGGGTCAGGAGAGCCGGCTGGGAGAGGCGGCGTCAGGGTGGGTCCTGCGCCTGCCCTTTCCGCGCCGGCTTTGCGCCGTCGTTGCCGTCGGTTCTCCAGCCAGCAGCCTGCCTCCGGCCTCCCGCCTCCGGGCGTTCTTCGTTTTCTGGTCGGACGGGCCTGGGTGAACTCTGCTGCACGTCGGCTCCGCGGGCCTTTGTCCCCGAGGCCGCGCCGGGAGCTCCCAAGCGCACTCCTGGGCCGGACCTCGGCGCGGGACAAAAGCCAAACGCCCCAGGCGGGCAGACCCCGATCCTGCTGCGCCGCCTTCAAGGGGGACCGCCGGCCGCGAGCCAG
Seq C2 exon
GTTGGGATTTGCTGTGTTCCTGGGCAGGTGCCTGGTCAATCAGTCCTCGGGATGGCAGCCATCAACCCGTGGGCCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)