MmuINT0179539 @ mm10
Intron Retention
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:12478293-12479746:+
Coord C1 exon
chr7:12478293-12478706
Coord A exon
chr7:12478707-12479663
Coord C2 exon
chr7:12479664-12479746
Length
957 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTCTTCGCTTTGTCTCTAGGCT
3' ss Score
10.67
Exon sequences
Seq C1 exon
AATAGTCCTCGCGGTGTGTCCTGGTCGACTCTGGGGGGTGCGGCCGCCATTGTCCGCGGCCAAAGTAAGGCCTTATTCCGGACCGAAGGGCTACCGATGTCGTTGTCACGGAGAGCCTGGCAGGTCGTTGGAACGGCCACGGAGAAGCGGCGCCTGCGGCCAGGGCTGGCTCAGTGCCGGGGTGCAACGGGTGCCTTCTCTTCTCTCGCCGACTCGGTGCCCCCATTGCCCTCGACCCTCCAGGTCCCGGGTCTGGGTGCGCTGTTTCTACAGACTGGGAAAGGCCGGCCCTAGTGGGCCGAGTCGGCCAGGCCTGGGACGTTGTCTCGGTGCAGGACAGAAGCCAGACGCTCGGTGCAGCAGCCCCGAGCCAGCTCAGCCGCAGTGCAATCAGGGCCAGTGGCCGCGAGCCAG
Seq A exon
GTAAGGCGGGAAGCTTGCTGAAACCAGCGCCTGGAGCGACCTGGTTGCGGAGGCCCTGAAGGAGAGCCAGGCTCTTAACCGGTCCCTTCCAAGCAAAGATCTGTAAAGGGCGTCAAACCTGACTTGGGAAAGGCTCAGGTTCTTTTAAATTTGAAGTGACAAGAGGGTGTGTGTGTGCTGTCCCGTTAGGGTGTGCGTGCATGGTTCTTGCAACTTGCTTGCCTTGAGTTATGGGGGGGGGGGGGGGGGGTGTAGGATTCTTACAACTTGCTTGCCTTGAGCTTTGTTTGACTCAAATCCTAGGGTATCTGAGTCTCTCTCTGTAAGTGTGCCAGTGCTTAGTACCAAACTCAGTACCAAGCGGTTGCGGACCTCACACAAAGACCCGGAATCCATGCATTTGTGGGGTCTGACTCTAGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCTGACGCGACTACGGGAGGGGAGAGGGGATCGATGGGCTTGAGTCTGGAAGATCTTGCAGGTGGTGATGGCTGTTGTTTGGCTTTAACCTTTGCAGACGATCACACTTTATCCCAAAGTGTGTCTGTGTCAGTGATAACTATGTGGTTAGTATTAGGTATCTTCTTCAGTGGCTCTCTATCTTGGCTTTGAGACAGGGTCTCTTTCTGAACCAGGAAGCTTCTAATTCCACTCTATTGACTTGTCAGAAATTCCCAGGGATTCTCCTGTCTGCCTCCCCATTGCTGGTATTACTTGTGCTCCACTTACTGCACAATGTGTGTGTGTGTGTTTGTGTGTGTGTGCGCGCGCGGTTTTTTTGTTTGTTTGTTTTTATCATGCTTCTTAGGGGTCTTGTTAACTTTGTGGATGTGTTCTCTTTGTTTTTGTTCTCGCTGGACTTTTTGTGAGACTGGACCAATTTTGCCTTTTTTTTTTTTTTTTTTTTTCTTCGCTTTGTCTCTAG
Seq C2 exon
GCTGATACTTGCAGTGCTCCTGGGCAGGACCCTGGCTGGTTAATCCTCAGGAATGGCTGCCATCAACCCATGGCCCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386:ENSMUST00000098822:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.109
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCTACCGATGTCGTTG
R:
CCCAGGAGCACTGCAAGTATC
Band lengths:
354-1311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types