MmuINT0179539 @ mm9
Intron Retention
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:13063654-13065095:+
Coord C1 exon
chr7:13063654-13064055
Coord A exon
chr7:13064056-13065012
Coord C2 exon
chr7:13065013-13065095
Length
957 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTCTTCGCTTTGTCTCTAGGCT
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGTGTCCTGGTCGACTCTGGGGGGTGCGGCCGCCATTGTCCGCGGCCAAAGTAAGGCCTTATTCCGGACCGAAGGGCTACCGATGTCGTTGTCACGGAGAGCCTGGCAGGTCGTTGGAACGGCCACGGAGAAGCGGCGCCTGCGGCCAGGGCTGGCTCAGTGCCGGGGTGCAACGGGTGCCTTCTCTTCTCTCGCCGACTCGGTGCCCCCATTGCCCTCGACCCTCCAGGTCCCGGGTCTGGGTGCGCTGTTTCTACAGACTGGGAAAGGCCGGCCCTAGTGGGCCGAGTCGGCCAGGCCTGGGACGTTGTCTCGGTGCAGGACAGAAGCCAGACGCTCGGTGCAGCAGCCCCGAGCCAGCTCAGCCGCAGTGCAATCAGGGCCAGTGGCCGCGAGCCAG
Seq A exon
GTAAGGCGGGAAGCTTGCTGAAACCAGCGCCTGGAGCGACCTGGTTGCGGAGGCCCTGAAGGAGAGCCAGGCTCTTAACCGGTCCCTTCCAAGCAAAGATCTGTAAAGGGCGTCAAACCTGACTTGGGAAAGGCTCAGGTTCTTTTAAATTTGAAGTGACAAGAGGGTGTGTGTGTGCTGTCCCGTTAGGGTGTGCGTGCATGGTTCTTGCAACTTGCTTGCCTTGAGTTATGGGGGGGGGGGGGGGGGGTGTAGGATTCTTACAACTTGCTTGCCTTGAGCTTTGTTTGACTCAAATCCTAGGGTATCTGAGTCTCTCTCTGTAAGTGTGCCAGTGCTTAGTACCAAACTCAGTACCAAGCGGTTGCGGACCTCACACAAAGACCCGGAATCCATGCATTTGTGGGGTCTGACTCTAGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCTGACGCGACTACGGGAGGGGAGAGGGGATCGATGGGCTTGAGTCTGGAAGATCTTGCAGGTGGTGATGGCTGTTGTTTGGCTTTAACCTTTGCAGACGATCACACTTTATCCCAAAGTGTGTCTGTGTCAGTGATAACTATGTGGTTAGTATTAGGTATCTTCTTCAGTGGCTCTCTATCTTGGCTTTGAGACAGGGTCTCTTTCTGAACCAGGAAGCTTCTAATTCCACTCTATTGACTTGTCAGAAATTCCCAGGGATTCTCCTGTCTGCCTCCCCATTGCTGGTATTACTTGTGCTCCACTTACTGCACAATGTGTGTGTGTGTGTTTGTGTGTGTGTGCGCGCGCGGTTTTTTTGTTTGTTTGTTTTTATCATGCTTCTTAGGGGTCTTGTTAACTTTGTGGATGTGTTCTCTTTGTTTTTGTTCTCGCTGGACTTTTTGTGAGACTGGACCAATTTTGCCTTTTTTTTTTTTTTTTTTTTTCTTCGCTTTGTCTCTAG
Seq C2 exon
GCTGATACTTGCAGTGCTCCTGGGCAGGACCCTGGCTGGTTAATCCTCAGGAATGGCTGCCATCAACCCATGGCCCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-Zfp606:NM_026112:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.091
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCTACCGATGTCGTTG
R:
CCCAGGAGCACTGCAAGTATC
Band lengths:
354-1311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: