BtaALTD0024895-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2751645-2753554:+
Coord C1 exon
chr25:2751645-2751782
Coord A exon
NA
Coord C2 exon
chr25:2753359-2753554
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
3' ss Seq
AGTATGGGGGTTATTTCTAGGTT
3' ss Score
3.48
Exon sequences
Seq C1 exon
TGCCTTAGGAAGAAGATCCTTTTATTGGTTTTATTCAAAACCAGATCGGGCTTCAGTTGTCAGAGGTAGCCGCTGGTGGGGTGTCTAATACAGGAGCAGAATTGTTCCTGGAGAAGAATGATGACAGTAGATCTGAAG
Seq A exon
NA
Seq C2 exon
GTTGCAGTCCAGGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAGCAGCAGAGGCCCCAGGCTTCCAGCTGAAGCCAGCAGAGTCCCAGCCAGTGGGCATGTCCCTGGAGGAAGAAGTTTGGAATATACACCAGGGTCTACAAGAGCCACTGAGCAGGAATACCCACAAAGAACCTGAGCCCGTATGTGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381-3-1,4-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAAACCAGATCGGGCTTCA
R:
CCCTCTCACATACGGGCTCAG
Band lengths:
302-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development