BtaINT0166038 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2751645-2753554:+
Coord C1 exon
chr25:2751645-2752172
Coord A exon
chr25:2752173-2753358
Coord C2 exon
chr25:2753359-2753554
Length
1186 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
AGTATGGGGGTTATTTCTAGGTT
3' ss Score
3.48
Exon sequences
Seq C1 exon
TGCCTTAGGAAGAAGATCCTTTTATTGGTTTTATTCAAAACCAGATCGGGCTTCAGTTGTCAGAGGTAGCCGCTGGTGGGGTGTCTAATACAGGAGCAGAATTGTTCCTGGAGAAGAATGATGACAGTAGATCTGAAGGTGGCTGAGTTCTCGAACCCTCAGATCAGAGCTCTTTGGGAGACCAAAGGACCTGTGGCAGAGAACGCCAGTCAGCATAAGAAACATGCCCCACAGACGGACAGTCTCAGTCCTGAGAGGTCTCACCAGCACTTCCGGAACTTCCTCTATCATGAAGCAGCTGGACCCCGGGAGGTAGTTGACCAGCTTCAAGAATTATGCCGTCAGTGGCTGAGGCCAGAGATTCATTCAAAAGAGCAGATCTTGGAACTTGTGGTGCTAGAGCAGTTCCTGACCATTCTGCCCGGGGACACCCAGACTCTCTTAAAGAAGCAACATCCACAGAGCATCGAGGAGGCTGTGGTCCTGGTAGAACACTTGAAAAAGGAAACTGGCCAAACAAGGAATGGG
Seq A exon
GTGAGGAGAAAGATTCTTGATGTGCAGTGAAATAGAGTGAAGGTGGATATACTGGGGCAGTTAATTGGGAGAAAAAATGGATTAGGTCACTATTGGATTGCTCCTTTAGCACTTGTGAAGCAGGACCTGAAAGCACAGACCCGCAGCCTTAGTCAGCCCATAGGATTCAGAGATCCTGGTAGAGACTTCCCTGGCCTTAGGGACAGAGTTGAGTTTTGCTCTCTTTGGAGCCAGGGTGTGTTGAGGGTAATGAGCCTAGTCTGGCTTGGCCAAGGAGATGGACCTCAAATTCTTAGAAACATACAAAAAGCACTAAGGAGCTGGAGAGTTCAGGACAGATCAGAAATGAAAGATCTCTGAGAGACCAAAAGAGAGCGAAGATACGACAGAGAAGGAACAAACCAAACGACTAGGGGACAACTGCCCAGGAAGGGGAAAAAGTAGAAAGAACACAGAGAAAGAAAGATTTGAAATCCCAGCAGAGTAGCTGAGAGAAGAAAGACCCTGAGGGATAGTGTCCTCTGTACCATAGGCGAGAGCCTCCACTGCCCTCTCTCAGTGGTTGTTCCTGGCTCTGCTCTGAGTGGGGATCCAGGACATGCCCTTGGGCAGGTGACAGCTCACCAGCTGGCCTCAGGCCCACTGTGAATACCAGGAGGGCACGTGTTTTGTATCAAAATCATTTGGGGATAGGACAGAGCCATTTCTCTTACCCGCTTTTTTCTCCATTTCATCCCCATTGTCTTTAAGAATCTTCCCTGACTATGTGGAAAATCTGGTTGACAGGACAACTTTTAAATTCAATTCCTTAATCTTCTGAGAAAAGACAGGAAACCACTAAGGCAAGGATCTAAGTTGGGAGAGAAAGCCTGTCAAGGCAGCATGAGAACAGGTGGCCTGTGCAACCCTGTTAGTGGGCTGAACTGGGCTGAATTCAGAGAGTGGGACTGCTGTCTTGGAGAGCTGGCAGTAACTACACCCTTTACTGGTTTCTCCCAGTTTTCCTATGTTGTGTATGGATTGTTCTTGTGGAAAATTGGTGGCTGGTATCTCTAGGTCTTTGTGTCATTTCCTTCAGCGTCTCCCTCTTTCCCCGCAGTCTGCACTCTCTGCTTTTTCCTCCCTCTCCCATCAAGCCCAAACCAAAAGTCAGTTCTGTGGTAACAAGTATGGGGGTTATTTCTAG
Seq C2 exon
GTTGCAGTCCAGGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAGCAGCAGAGGCCCCAGGCTTCCAGCTGAAGCCAGCAGAGTCCCAGCCAGTGGGCATGTCCCTGGAGGAAGAAGTTTGGAATATACACCAGGGTCTACAAGAGCCACTGAGCAGGAATACCCACAAAGAACCTGAGCCCGTATGTGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381:ENSBTAT00000053980:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAACATGCCCCACAGACG
R:
CAAGAGCACTGCCTCCTTTCC
Band lengths:
351-1537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]