HsaINT0188286 @ hg38
Intron Retention
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:HGNC:13146]
Coordinates
chr16:3305486-3311948:+
Coord C1 exon
chr16:3305486-3305643
Coord A exon
chr16:3305644-3311752
Coord C2 exon
chr16:3311753-3311948
Length
6109 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
AGGATGGGAATTATTTCTAGGTT
3' ss Score
2.87
Exon sequences
Seq C1 exon
TTCCGGCCGGCGCTCTGGCTCTGTACCTGGACAGGGCTGCGGTAGGCCAGCGGTGGGCTGGCGGTTGCGCTCCTCAGATCGGCGGCCTTTCGGGCGGTGGCTTGCGTTTGAGCCTCAGAAAGCGAGGAGCGGCCTCCACGGAAGCCAAGCTGGCCGAG
Seq A exon
GTAACCGAGAAGCGGCTTCCCCTATGGCTTCGACCCTGGAGCCGCTGGAGCGGCGGCGGCCGCAGGGAGGCAGCCATTTTCCGTAGGCGGTGGCCGCGGCGCTTCCGGGCCGCGCGGCTGGAGCCTGAGGCGGGGCCACCGTCGGGCACGAGAAACCATTCTCTCCCCGCTTTTCGCAGCTGTATCCCAGAGGCGCGGCTGAAGCTCGCTGGGACACTGCCCGCTTGCCCAGTGCCCACGGGCACGCCTGTCGCAGACACAGGCTGTGGCGAATCCGAGTGCTGGCGGGCAGCAGTGCCTGCAGCTGCGCCCGCAGACTCTTTCCCGCCTCCGCCGGCATTTCCGTGTCCGGCCGATGTCATGCGGTCGGTTGAGCCTCAGGGCTAGCAGCTTCTACTGATGCAAAAACATAGGAAGTGTCTCTTTGCTTCTGGAACCGGGGTGGGCAGCAAGGAGCTGGCCACTTCTTTGAATACCGGTGGCATCCTGGGCAGAATTTCGGTGCCGTTTCTGCTGGCTCACTTCAGGAAAAGTGAGGCTCACGGCTCTCCTCAGCCCCCCTTAGAAGTCTAAATGACCTTTGGAGAAATACAAAGTCAGCAGAAAGTTTCACTTTCATCGTCACCAACTCCTGTTGGAGTTGATATTTCATAAACATCAGCGACAGAAAGAAAATACGACTTGATATTTTGTAAATAAAATATCCTTTTTTACAAGTTGATATTTTGTAAACAGAGGTCAGCTGTAATTTTCTCCAGATCAAGTAAGCACAGTTAAAAATTCATATAGGCCTGGCGCGGTGTTTGACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGATGGGTGGATCACGAGGTCAGGAGATCGAGACCACCCTGGCCAAGATGGTGAAACCCTGTCTCTACTAAAAACACAAAAATTAGCCGGGCATGGTGGCACGCGCCTGTAATCCCAGCTAGTCGGGAGGCTGAGGCAGGAGAATGGCTTCAACCGGGGAGGTGGAAGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGGGCGAGACTCCATCTCAAAAAAAAAAACAAAATTCGTATAAATCATCTGCATGGCACCCTTTATGTGTGTTGCAAAGAATGATGAGCATCTTGTTGCTTACTTGGGAGACATTGTCTGAAAATAGGCTACTTTTTTACTTTCTGTAGTACCCCCTCCCCCCACTGTATCTGGGTTTCACTTACCCGCTGTCAACTGCCATCCAAAAAATATTAAATGGAAAACTCCAGAAATAAACAGTTCATAAGTTTTAAATAACTTTTTTTTTTTTTTTTGGAGATGGAATCTCGTTTTGCTGCCCTGGCTGGAGTGCCGTGGCACAGTCTGAGCTCACTGCAGCCTTCACCTCCCGGGTTCAAACAATTTTCCTGCCTCAGCCTCCTGGGTAGCTGGGACTACAGGCGCGCACTACCACACCTGGCTAATTTTTGTGTTTACAATAAAGAAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAAGTCCTGGTCTCAGGTGATCCACCCACGTCAGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACGGCGCACCGCCAGTTTTAAATAACTCTTACTACAGTGTTTTATTGTTAATCTCTTATTGTACCTAATTTATAAATTAAGGTATCATAGCTATGTATACATAGAGAAAATAGTATAATGCAGTTAGATGCTGTTGGGGGTTTTAGGTATTCACAGAATGTACTGGAACTTACCCCCCTTGGAGAAGGGATACTACTGTATTTTGATCTCACCGTCTCAGCTCTTTTGCCAGTATTCCTACAATGGAAAATCTAAAATGTTGTTTTTTAAGGTGCCTTTATTTTTAGTTTTTAAATTAGAGACAAAGTCTTGCTCTAACTCCCAGGCTGGAGTGCAGTGATGAGGTCATGGCTCACTGCAACCTTGAATTCCTGGGCTCAGGCGACTCTCCCACCTCAGCCTCCTGAGCTAGAACTACTGGTGTGCTCTACCATCCTGGCTATTTTTTTTTTTTTTCTTCAAATTTTGTGTTTTGTAGAGACGGGGTCTCGCTATGTTGCTCAGGCTGGTCTGAAACTCCTGGCTCAAGTGATCCTCCCACCTCGGTCTCCAAAAGTGCTGGGAATGCAGGCATGAGCCACTGCACCTGGCCTAAAATATTTTTAAAGTGAAGGCTTCCATCTTCACAAGAGGATGAAGGGTCATAAAAGTTGTACTCCCCTTACTAGAGACAGACTGGGATGATCTGTTGAAATTTAAGAGAATCTCAGAATGTTTTCCTAATCTTATTTTCTCCTATTCTTTTCTTATGGGGAAGATGGGATAGGAGGCACACCAGTTAAATCCTTGGAAAATCCCAAAATACCTTTCAGCCAGTGGGTGCCAATTTTCTTACCCACCAATCTTTCCTAAATTGTTTTCTTTTTTATAAAAAAGACAGTTGTCCACTGACATTTGTGTGTTTTGTGCTGTGCTTCAGCTGAATAATAGAAAAGGAGAAAAACAAAGGGCCTGCTAGTTGATTTTGAAGGGAAGACAGGACACCTTTTCTGTTCTTCTTTCTCTCATAAGTCGCAAGTGATGAGGTTCATGTGAGTTTCTTATTGATACATACTTTTCTTTTTCTTGTCCTCAGTGCTTTTAGGAAGAAGATCCTTTTATTGCTTTTGTACAAGACCAGACAGGATCTCATTTGTTAAACGTGGTACCAATTGGGTGTCTTAACACAGGAGCAGAACTTCCTAGAGCAGAATGATGATGGTAGATCTGAAAGTGGCTGCGTACTTGGACCCTCAGATCAGGGCTTTGTGGGAGACCAAGGGGCCTGCAAGAGAGAGCTCCGGTCAGAGTAAAAAATCTCCTCAAATGGACTGTCTCGATCCTAAGAGCTCTTGCTGGCACTTCCGGAATTTCACCTATGATGAAGCAGGTGGACCCCGTGAGGCTGTCAGCAAACTTCAAGAATTATGTCATCTATGGCTGAAGCCAGAGATCCACTCAAAAGAGCAGATACTGGAACTGCTGGTGCTGGAGCAGTTCCTGACTATTCTGCCCAGGGAGACACAGACCCAGATGCAGAAGCACCATCCACAGAGCATTGAGGAGGCTGTGGCTCTGGTAGAACACTTGCAGAGGGAATCTGGTCAAACATGGAATGGGGTGAGAAGAAAGATTCCTGACATGTACAGTGAAATAGGATGCAGGTGGATATAGTAGAGATGGTGGCAGTTAGTTGAGAAATTAGATGGATTAGGTAGGTCATTGTTTGGTTTTTTTTTTAAGGACAGTTAAGGTGGGACTTGAAACTACAGGCCCACAGAAAAGTTCACAGGTTTCAGAGATTGTGGTAGATACTTCCCTGGCCTTAGAGAAAGAGAGTTGCTTTTGCCCTCTTTGGAGCCAGGGTGAATTGAGGGTGTTGGGCCTAGTCTGGCTTGGCCAAGGAGACAGGACTTAAGTACTTAGAAACAGAATAAAAGGTAATAAAGAGTCAGGGAGGCTGGATGCAGTGGCTCACACCTGTAATCTCAGCACTTTAGGAGGCTGAGGCGGGTAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGACAGCATGGTGGAACCCTCTCTCTACAAAAATAAACAAATTAGCTGGGCATGATGACCGGTGCCTGTAATCCCGGCTATCCTCGAGGCTGAGGAGGGAGAATCATTTGAACCTGGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCAACACAGCAAGACTCCATCTCACAAAAAAAAAAAAAACAAAAAAAACAAAAAAAAAACGGGCCGGGTGCAGTGACTCACACCTGTAATTCCAGCACTTTGAGAGGCCAAGGCAGACAGATCCCCTGAGCCCAGCCTGGGCAACATGGTGAAACCCCGTCTCTACAAAAAACATGAAAATTAGCCAGGCATGGTGGCACACACCTGTGGTCCCAGTTACTTGGGAGGCTGAGTCAGGAGAATCACCTGAGCCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATGGCACCATTGCACTCCCTTGGGTGACAGAGTGAGAACCTGTCAAAAAAAAAAAAAAAAGGCAGATCCACAAGGAGAACACAGGAAAACAAGGACACTTAAAGAAAAGGAGAAATTGGCCAGGTTCGGTGGCTCATGCCTATATTTCGAACACTTTAGGGGGTCGCGGTGGGAGGACTGCTTGAGACCAGCCTGGGGAACATAGTGTGACCTTGTTGCTATGAAAAAAAAAAAGAAAATAAGCCAGGCTGATGGCACATGCCTCTAGTCCCAGCTTCACAAGAGGTTGAGGTGAGAGAATTGCTTGACCCAGAAGTTTGAGGCTACAGTGAGTTATTATTGCAGCATTGTACTCTGGCCTGGGCAACAGAGTGAGACCTTGTCTCTTAAAAAAAAAAATGTTTTAGGCCAGGCGTGGTGGCTCACATCTGTGATCTCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGTTCAAAACCAGCCTGACCAACATGCTGAAACCCTGTCTCTACTAAAAATACATAAACTAGCTGAGCATGGTGGCGTGTGCCCGTAATCCCAGCTACTCAGAAGGCTGAGGCAGGAGAATGGCTTGAACTCGGGAGGCAGAGGCTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCAGGGCAACTGAGCGAGACTCCATGTGAAAAAAAAAATGTTTTTAAAAATTAGGAAAAATCCAGCCTGGGCAACATGGTGAAGCTCAGTCTCTACAAAAAATACAAAAATCAGCTGGGCATGGTGGCGTGTGCCTGTAGTCCCAGCCACTCGGGAGGCTGAGGTGGGAGGATCACCTGAGCCTGGGGAGGATGAGACTGCAGTGAGCCATGATTGTACCACTGTACCCCAGCCTGGGTGACAGAGTGAGACCCCCGTCTCAAAACAAAACAAACAAACAAAAAAAACAACTAGGGGAAGACTGCACAAGAAAAGAAAACATAGAAAAAAGGGAAACAAAGATTTGGAAAAAAGAAAAATCCCAACAGAATAGCCAAGGACAGGAAATGCACTGATGGGTAATGTCCTCCCTATAGTAGATGAAAGTCTCTACTGCCTTCCCTTAATGCTTGTTCCTTGGCTCTGCTGACAAGTTGGGAGCCAGGGTATGAACTTGGTGGGTGGCGACACATCTGCTGACCTCGGGTCTGCTGGGAAGAATACAGGGCAGGACCTATGTTTGGTGTCAGAATCATCTGGAGGTAGGTTGGAGCCACTCCCCTTTTTTCTCCATTCTATCCCCATTCTCTGAAAACCTTCGCTGGCTATAGGGATAATCAGGCTGACAGGAAAACTTTTAAATTCATTTATTTGAATTTTAGAGAAAACTAGAAGACAGAAAACCACAACTGTGGGATTGAAGTCAACAGAAAAGGCCTGACAAGACAGTATTAGAATGAGTGGCCTGCCTGGCTGGGCACAATGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATTACCTGAGTTTGGGAGTTTGAGACCAGCTTGACCAACATGAAGAAACCCCGTCTCTACTAAAAATGCAAAAATTAGCCAGGCGTGGTGGTGCATACCTGTAATCCCAGCTACTTGGAAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTAGCAGTGAGCCGAGATTATGCCTTTGCACCCCAGCCTGGGCAACAAGAGCAAAACTCATCTCAAAAAAAAAAAAAAAAATGAGTGGGCTGCCCAACCCTGCCAGTGGCCTGACCTAGACCGTATACAGAGGAGTAGAAGCTGCTGTGTTAAAGGGCTGGCAGGCACCACAGTTTGTTTCCTTTCACCCTAGTTTTCTCATATTTGTGTATAGTCATTTGTGGAGCATTGGTGGCCCAGTATCTCTTTAAGCCTTTTTTTGTCATTTTTTTTAGTGTCTTATACTACCCACAATGTGGGCTGTACACCTGTCGCTCTGCCTCCACCCCCACAAACCAAAAGTAAGTTCTGTGGTAACAAGGATGGGAATTATTTCTAG
Seq C2 exon
GTTGCAGTCCATGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAACAGCAGAGGCCTCAAGTTTCGGGCTGAAGCCAACAGAGTCCCAACCAGTGGGCGTATCCCAAGATGAAGAATTTTGGAATACATACGAGGGTCTGCAAGAACAGCTCAGCAGGAATACTCATAAAGAGACTGAGCCTGTGTATGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086:ENST00000574298:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains