HsaINT0188286 @ hg19
Intron Retention
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:13146]
Coordinates
chr16:3355433-3361948:+
Coord C1 exon
chr16:3355433-3355643
Coord A exon
chr16:3355644-3361752
Coord C2 exon
chr16:3361753-3361948
Length
6109 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
AGGATGGGAATTATTTCTAGGTT
3' ss Score
2.87
Exon sequences
Seq C1 exon
GCGCCTTAGCCAGAGGGCGGGCCTGCGCCACCCTCGGAAAGCGTCACTTCCACTTCCGGCCGGCGCTCTGGCTCTGTACCTGGACAGGGCTGCGGTAGGCCAGCGGTGGGCTGGCGGTTGCGCTCCTCAGATCGGCGGCCTTTCGGGCGGTGGCTTGCGTTTGAGCCTCAGAAAGCGAGGAGCGGCCTCCACGGAAGCCAAGCTGGCCGAG
Seq A exon
GTAACCGAGAAGCGGCTTCCCCTATGGCTTCGACCCTGGAGCCGCTGGAGCGGCGGCGGCCGCAGGGAGGCAGCCATTTTCCGTAGGCGGTGGCCGCGGCGCTTCCGGGCCGCGCGGCTGGAGCCTGAGGCGGGGCCACCGTCGGGCACGAGAAACCATTCTCTCCCCGCTTTTCGCAGCTGTATCCCAGAGGCGCGGCTGAAGCTCGCTGGGACACTGCCCGCTTGCCCAGTGCCCACGGGCACGCCTGTCGCAGACACAGGCTGTGGCGAATCCGAGTGCTGGCGGGCAGCAGTGCCTGCAGCTGCGCCCGCAGACTCTTTCCCGCCTCCGCCGGCATTTCCGTGTCCGGCCGATGTCATGCGGTCGGTTGAGCCTCAGGGCTAGCAGCTTCTACTGATGCAAAAACATAGGAAGTGTCTCTTTGCTTCTGGAACCGGGGTGGGCAGCAAGGAGCTGGCCACTTCTTTGAATACCGGTGGCATCCTGGGCAGAATTTCGGTGCCGTTTCTGCTGGCTCACTTCAGGAAAAGTGAGGCTCACGGCTCTCCTCAGCCCCCCTTAGAAGTCTAAATGACCTTTGGAGAAATACAAAGTCAGCAGAAAGTTTCACTTTCATCGTCACCAACTCCTGTTGGAGTTGATATTTCATAAACATCAGCGACAGAAAGAAAATACGACTTGATATTTTGTAAATAAAATATCCTTTTTTACAAGTTGATATTTTGTAAACAGAGGTCAGCTGTAATTTTCTCCAGATCAAGTAAGCACAGTTAAAAATTCATATAGGCCTGGCGCGGTGTTTGACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGATGGGTGGATCACGAGGTCAGGAGATCGAGACCACCCTGGCCAAGATGGTGAAACCCTGTCTCTACTAAAAACACAAAAATTAGCCGGGCATGGTGGCACGCGCCTGTAATCCCAGCTAGTCGGGAGGCTGAGGCAGGAGAATGGCTTCAACCGGGGAGGTGGAAGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGGGCGAGACTCCATCTCAAAAAAAAAAACAAAATTCGTATAAATCATCTGCATGGCACCCTTTATGTGTGTTGCAAAGAATGATGAGCATCTTGTTGCTTACTTGGGAGACATTGTCTGAAAATAGGCTACTTTTTTACTTTCTGTAGTACCCCCTCCCCCCACTGTATCTGGGTTTCACTTACCCGCTGTCAACTGCCATCCAAAAAATATTAAATGGAAAACTCCAGAAATAAACAGTTCATAAGTTTTAAATAACTTTTTTTTTTTTTTTTGGAGATGGAATCTCGTTTTGCTGCCCTGGCTGGAGTGCCGTGGCACAGTCTGAGCTCACTGCAGCCTTCACCTCCCGGGTTCAAACAATTTTCCTGCCTCAGCCTCCTGGGTAGCTGGGACTACAGGCGCGCACTACCACACCTGGCTAATTTTTGTGTTTACAATAAAGAAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAAGTCCTGGTCTCAGGTGATCCACCCACGTCAGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACGGCGCACCGCCAGTTTTAAATAACTCTTACTACAGTGTTTTATTGTTAATCTCTTATTGTACCTAATTTATAAATTAAGGTATCATAGCTATGTATACATAGAGAAAATAGTATAATGCAGTTAGATGCTGTTGGGGGTTTTAGGTATTCACAGAATGTACTGGAACTTACCCCCCTTGGAGAAGGGATACTACTGTATTTTGATCTCACCGTCTCAGCTCTTTTGCCAGTATTCCTACAATGGAAAATCTAAAATGTTGTTTTTTAAGGTGCCTTTATTTTTAGTTTTTAAATTAGAGACAAAGTCTTGCTCTAACTCCCAGGCTGGAGTGCAGTGATGAGGTCATGGCTCACTGCAACCTTGAATTCCTGGGCTCAGGCGACTCTCCCACCTCAGCCTCCTGAGCTAGAACTACTGGTGTGCTCTACCATCCTGGCTATTTTTTTTTTTTTTCTTCAAATTTTGTGTTTTGTAGAGACGGGGTCTCGCTATGTTGCTCAGGCTGGTCTGAAACTCCTGGCTCAAGTGATCCTCCCACCTCGGTCTCCAAAAGTGCTGGGAATGCAGGCATGAGCCACTGCACCTGGCCTAAAATATTTTTAAAGTGAAGGCTTCCATCTTCACAAGAGGATGAAGGGTCATAAAAGTTGTACTCCCCTTACTAGAGACAGACTGGGATGATCTGTTGAAATTTAAGAGAATCTCAGAATGTTTTCCTAATCTTATTTTCTCCTATTCTTTTCTTATGGGGAAGATGGGATAGGAGGCACACCAGTTAAATCCTTGGAAAATCCCAAAATACCTTTCAGCCAGTGGGTGCCAATTTTCTTACCCACCAATCTTTCCTAAATTGTTTTCTTTTTTATAAAAAAGACAGTTGTCCACTGACATTTGTGTGTTTTGTGCTGTGCTTCAGCTGAATAATAGAAAAGGAGAAAAACAAAGGGCCTGCTAGTTGATTTTGAAGGGAAGACAGGACACCTTTTCTGTTCTTCTTTCTCTCATAAGTCGCAAGTGATGAGGTTCATGTGAGTTTCTTATTGATACATACTTTTCTTTTTCTTGTCCTCAGTGCTTTTAGGAAGAAGATCCTTTTATTGCTTTTGTACAAGACCAGACAGGATCTCATTTGTTAAACGTGGTACCAATTGGGTGTCTTAACACAGGAGCAGAACTTCCTAGAGCAGAATGATGATGGTAGATCTGAAAGTGGCTGCGTACTTGGACCCTCAGATCAGGGCTTTGTGGGAGACCAAGGGGCCTGCAAGAGAGAGCTCCGGTCAGAGTAAAAAATCTCCTCAAATGGACTGTCTCGATCCTAAGAGCTCTTGCTGGCACTTCCGGAATTTCACCTATGATGAAGCAGGTGGACCCCGTGAGGCTGTCAGCAAACTTCAAGAATTATGTCATCTATGGCTGAAGCCAGAGATCCACTCAAAAGAGCAGATACTGGAACTGCTGGTGCTGGAGCAGTTCCTGACTATTCTGCCCAGGGAGACACAGACCCAGATGCAGAAGCACCATCCACAGAGCATTGAGGAGGCTGTGGCTCTGGTAGAACACTTGCAGAGGGAATCTGGTCAAACATGGAATGGGGTGAGAAGAAAGATTCCTGACATGTACAGTGAAATAGGATGCAGGTGGATATAGTAGAGATGGTGGCAGTTAGTTGAGAAATTAGATGGATTAGGTAGGTCATTGTTTGGTTTTTTTTTTAAGGACAGTTAAGGTGGGACTTGAAACTACAGGCCCACAGAAAAGTTCACAGGTTTCAGAGATTGTGGTAGATACTTCCCTGGCCTTAGAGAAAGAGAGTTGCTTTTGCCCTCTTTGGAGCCAGGGTGAATTGAGGGTGTTGGGCCTAGTCTGGCTTGGCCAAGGAGACAGGACTTAAGTACTTAGAAACAGAATAAAAGGTAATAAAGAGTCAGGGAGGCTGGATGCAGTGGCTCACACCTGTAATCTCAGCACTTTAGGAGGCTGAGGCGGGTAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGACAGCATGGTGGAACCCTCTCTCTACAAAAATAAACAAATTAGCTGGGCATGATGACCGGTGCCTGTAATCCCGGCTATCCTCGAGGCTGAGGAGGGAGAATCATTTGAACCTGGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCAACACAGCAAGACTCCATCTCACAAAAAAAAAAAAAACAAAAAAAACAAAAAAAAAACGGGCCGGGTGCAGTGACTCACACCTGTAATTCCAGCACTTTGAGAGGCCAAGGCAGACAGATCCCCTGAGCCCAGCCTGGGCAACATGGTGAAACCCCGTCTCTACAAAAAACATGAAAATTAGCCAGGCATGGTGGCACACACCTGTGGTCCCAGTTACTTGGGAGGCTGAGTCAGGAGAATCACCTGAGCCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATGGCACCATTGCACTCCCTTGGGTGACAGAGTGAGAACCTGTCAAAAAAAAAAAAAAAAGGCAGATCCACAAGGAGAACACAGGAAAACAAGGACACTTAAAGAAAAGGAGAAATTGGCCAGGTTCGGTGGCTCATGCCTATATTTCGAACACTTTAGGGGGTCGCGGTGGGAGGACTGCTTGAGACCAGCCTGGGGAACATAGTGTGACCTTGTTGCTATGAAAAAAAAAAAGAAAATAAGCCAGGCTGATGGCACATGCCTCTAGTCCCAGCTTCACAAGAGGTTGAGGTGAGAGAATTGCTTGACCCAGAAGTTTGAGGCTACAGTGAGTTATTATTGCAGCATTGTACTCTGGCCTGGGCAACAGAGTGAGACCTTGTCTCTTAAAAAAAAAAATGTTTTAGGCCAGGCGTGGTGGCTCACATCTGTGATCTCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGTTCAAAACCAGCCTGACCAACATGCTGAAACCCTGTCTCTACTAAAAATACATAAACTAGCTGAGCATGGTGGCGTGTGCCCGTAATCCCAGCTACTCAGAAGGCTGAGGCAGGAGAATGGCTTGAACTCGGGAGGCAGAGGCTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCAGGGCAACTGAGCGAGACTCCATGTGAAAAAAAAAATGTTTTTAAAAATTAGGAAAAATCCAGCCTGGGCAACATGGTGAAGCTCAGTCTCTACAAAAAATACAAAAATCAGCTGGGCATGGTGGCGTGTGCCTGTAGTCCCAGCCACTCGGGAGGCTGAGGTGGGAGGATCACCTGAGCCTGGGGAGGATGAGACTGCAGTGAGCCATGATTGTACCACTGTACCCCAGCCTGGGTGACAGAGTGAGACCCCCGTCTCAAAACAAAACAAACAAACAAAAAAAACAACTAGGGGAAGACTGCACAAGAAAAGAAAACATAGAAAAAAGGGAAACAAAGATTTGGAAAAAAGAAAAATCCCAACAGAATAGCCAAGGACAGGAAATGCACTGATGGGTAATGTCCTCCCTATAGTAGATGAAAGTCTCTACTGCCTTCCCTTAATGCTTGTTCCTTGGCTCTGCTGACAAGTTGGGAGCCAGGGTATGAACTTGGTGGGTGGCGACACATCTGCTGACCTCGGGTCTGCTGGGAAGAATACAGGGCAGGACCTATGTTTGGTGTCAGAATCATCTGGAGGTAGGTTGGAGCCACTCCCCTTTTTTCTCCATTCTATCCCCATTCTCTGAAAACCTTCGCTGGCTATAGGGATAATCAGGCTGACAGGAAAACTTTTAAATTCATTTATTTGAATTTTAGAGAAAACTAGAAGACAGAAAACCACAACTGTGGGATTGAAGTCAACAGAAAAGGCCTGACAAGACAGTATTAGAATGAGTGGCCTGCCTGGCTGGGCACAATGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATTACCTGAGTTTGGGAGTTTGAGACCAGCTTGACCAACATGAAGAAACCCCGTCTCTACTAAAAATGCAAAAATTAGCCAGGCGTGGTGGTGCATACCTGTAATCCCAGCTACTTGGAAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTAGCAGTGAGCCGAGATTATGCCTTTGCACCCCAGCCTGGGCAACAAGAGCAAAACTCATCTCAAAAAAAAAAAAAAAAATGAGTGGGCTGCCCAACCCTGCCAGTGGCCTGACCTAGACCGTATACAGAGGAGTAGAAGCTGCTGTGTTAAAGGGCTGGCAGGCACCACAGTTTGTTTCCTTTCACCCTAGTTTTCTCATATTTGTGTATAGTCATTTGTGGAGCATTGGTGGCCCAGTATCTCTTTAAGCCTTTTTTTGTCATTTTTTTTAGTGTCTTATACTACCCACAATGTGGGCTGTACACCTGTCGCTCTGCCTCCACCCCCACAAACCAAAAGTAAGTTCTGTGGTAACAAGGATGGGAATTATTTCTAG
Seq C2 exon
GTTGCAGTCCATGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAACAGCAGAGGCCTCAAGTTTCGGGCTGAAGCCAACAGAGTCCCAACCAGTGGGCGTATCCCAAGATGAAGAATTTTGGAATACATACGAGGGTCTGCAAGAACAGCTCAGCAGGAATACTCATAAAGAGACTGAGCCTGTGTATGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086-ZNF75A:NM_153028:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)