HsaALTA1039546-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:HGNC:13146]
Coordinates
chr16:3308313-3311906:+
Coord C1 exon
chr16:3308313-3308836
Coord A exon
NA
Coord C2 exon
chr16:3311753-3311906
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
AGGATGGGAATTATTTCTAGGTT
3' ss Score
2.87
Exon sequences
Seq C1 exon
ATTGCTTTTGTACAAGACCAGACAGGATCTCATTTGTTAAACGTGGTACCAATTGGGTGTCTTAACACAGGAGCAGAACTTCCTAGAGCAGAATGATGATGGTAGATCTGAAAGTGGCTGCGTACTTGGACCCTCAGATCAGGGCTTTGTGGGAGACCAAGGGGCCTGCAAGAGAGAGCTCCGGTCAGAGTAAAAAATCTCCTCAAATGGACTGTCTCGATCCTAAGAGCTCTTGCTGGCACTTCCGGAATTTCACCTATGATGAAGCAGGTGGACCCCGTGAGGCTGTCAGCAAACTTCAAGAATTATGTCATCTATGGCTGAAGCCAGAGATCCACTCAAAAGAGCAGATACTGGAACTGCTGGTGCTGGAGCAGTTCCTGACTATTCTGCCCAGGGAGACACAGACCCAGATGCAGAAGCACCATCCACAGAGCATTGAGGAGGCTGTGGCTCTGGTAGAACACTTGCAGAGGGAATCTGGTCAAACATGGAATGGG
Seq A exon
NA
Seq C2 exon
GTTGCAGTCCATGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAACAGCAGAGGCCTCAAGTTTCGGGCTGAAGCCAACAGAGTCCCAACCAGTGGGCGTATCCCAAGATGAAGAATTTTGGAATACATACGAGGGTCTGCAAGAACAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086-1-7,1-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGACACAGACCCAGATG
R:
GAGCTGTTCTTGCAGACCCTC
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains