HsaEX0074296 @ hg38
Exon Skipping
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:HGNC:13146]
Coordinates
chr16:3305406-3311948:+
Coord C1 exon
chr16:3305406-3305643
Coord A exon
chr16:3308313-3308836
Coord C2 exon
chr16:3311753-3311948
Length
524 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCTTGTCCTCAGTGC
3' ss Score
11.16
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
TCTGGCGAGGAAGTAGGCCGGGCTCAGGCGCCTTAGCCAGAGGGCGGGCCTGCGCCACCCTCGGAAAGCGTCACTTCCACTTCCGGCCGGCGCTCTGGCTCTGTACCTGGACAGGGCTGCGGTAGGCCAGCGGTGGGCTGGCGGTTGCGCTCCTCAGATCGGCGGCCTTTCGGGCGGTGGCTTGCGTTTGAGCCTCAGAAAGCGAGGAGCGGCCTCCACGGAAGCCAAGCTGGCCGAG
Seq A exon
TGCTTTTAGGAAGAAGATCCTTTTATTGCTTTTGTACAAGACCAGACAGGATCTCATTTGTTAAACGTGGTACCAATTGGGTGTCTTAACACAGGAGCAGAACTTCCTAGAGCAGAATGATGATGGTAGATCTGAAAGTGGCTGCGTACTTGGACCCTCAGATCAGGGCTTTGTGGGAGACCAAGGGGCCTGCAAGAGAGAGCTCCGGTCAGAGTAAAAAATCTCCTCAAATGGACTGTCTCGATCCTAAGAGCTCTTGCTGGCACTTCCGGAATTTCACCTATGATGAAGCAGGTGGACCCCGTGAGGCTGTCAGCAAACTTCAAGAATTATGTCATCTATGGCTGAAGCCAGAGATCCACTCAAAAGAGCAGATACTGGAACTGCTGGTGCTGGAGCAGTTCCTGACTATTCTGCCCAGGGAGACACAGACCCAGATGCAGAAGCACCATCCACAGAGCATTGAGGAGGCTGTGGCTCTGGTAGAACACTTGCAGAGGGAATCTGGTCAAACATGGAATGGG
Seq C2 exon
GTTGCAGTCCATGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAACAGCAGAGGCCTCAAGTTTCGGGCTGAAGCCAACAGAGTCCCAACCAGTGGGCGTATCCCAAGATGAAGAATTTTGGAATACATACGAGGGTCTGCAAGAACAGCTCAGCAGGAATACTCATAAAGAGACTGAGCCTGTGTATGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086-'0-7,'0-0,1-7=AN
Average complexity
A_S
Mappability confidence:
89%=100=88%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGGAAAGCGTCACTTC
R:
TTCCTGCTGAGCTGTTCTTGC
Band lengths:
342-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development