BtaALTD0024902-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021222 | ZNF771
Description
zinc finger protein 771 [Source:HGNC Symbol;Acc:HGNC:29653]
Coordinates
chr25:26840130-26841033:+
Coord C1 exon
chr25:26840130-26840230
Coord A exon
chr25:26840231-26840530
Coord C2 exon
chr25:26840884-26841033
Length
300 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GACTCAGCTCCCTGCCCCAGGAC
3' ss Score
5.56
Exon sequences
Seq C1 exon
CCAGGCAGGGGCGGGAGTGCACGTGGCCTATTTCGGGCGGAGCAGACGCGCTTGGCCGCCACGGAGACCTCCGAGCCGGCCACAGGAAACGAGCCTTGAAG
Seq A exon
GTAGGTCACAACTGGACTGTGAGGACGTTGAACACCGAGTAGGCCGGCCTGGGGTCTTTGGGAGTTAGGGAAGAGCGGAAGGCGCTGGGTGTGGGCTTGCCACCCTCCCAGGGCAGTTTGGGCCGGACGCCTGGGTCCTCTGACCCCTCCCCCTCGGGGGCGGAGTTATGTGTTCTGAACCAATGGCCGGTCGCCTCTGAGGCCCCGCCCACGCCCCGCCCCCGGAGTCGCGGCGTCGCAGAGTGCCCAACCGCCCGGCGCCCTGGCCTGGGGCAGCGCGAGCGCCCGAACCTGCGGCTG
Seq C2 exon
GACACCAAGATGCCCGGTGAACAGCAGACGGAGGAGGAGGAGGAGGAAGAGATGCAAGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGAAGAGGGTGAAGAGAAGTATGAAGTGGTGAAACTCAAGATCCCTATGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021222-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.819
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF043938=DUF535=PU(42.7=93.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGCACGTGGCCTATTTC
R:
AGGGATCTTGAGTTTCACCACT
Band lengths:
223-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development