BtaINT0166065 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021222 | ZNF771
Description
zinc finger protein 771 [Source:HGNC Symbol;Acc:HGNC:29653]
Coordinates
chr25:26840152-26841033:+
Coord C1 exon
chr25:26840152-26840230
Coord A exon
chr25:26840231-26840883
Coord C2 exon
chr25:26840884-26841033
Length
653 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GACTCAGCTCCCTGCCCCAGGAC
3' ss Score
5.56
Exon sequences
Seq C1 exon
GTGGCCTATTTCGGGCGGAGCAGACGCGCTTGGCCGCCACGGAGACCTCCGAGCCGGCCACAGGAAACGAGCCTTGAAG
Seq A exon
GTAGGTCACAACTGGACTGTGAGGACGTTGAACACCGAGTAGGCCGGCCTGGGGTCTTTGGGAGTTAGGGAAGAGCGGAAGGCGCTGGGTGTGGGCTTGCCACCCTCCCAGGGCAGTTTGGGCCGGACGCCTGGGTCCTCTGACCCCTCCCCCTCGGGGGCGGAGTTATGTGTTCTGAACCAATGGCCGGTCGCCTCTGAGGCCCCGCCCACGCCCCGCCCCCGGAGTCGCGGCGTCGCAGAGTGCCCAACCGCCCGGCGCCCTGGCCTGGGGCAGCGCGAGCGCCCGAACCTGCGGCTGGTGAGTGCGCAGCCCCCAGGGTCTCCGCCCCGATCCCGCCTCCAGCCCGTGCCCTAGAGCTCCGGGCCGCTGACCCAGGCTCCTGGGAGTGACTCAGCGCGGGGAGGGTGGCGTCTCACTGGGGCTGGAGATTCGAAGTGTTCAGGGCCTTGAATGCCAGGATGAGTAGCGTGAACGAGTCTTTCGAGCTGGTCCCGGGACAAGGCTGGGGCCTAGGGCCGGGCTGGGATACAGGGAAGAGGGTCAGACACAGATCTGGGCATGGGAGGAGAAGCCACGGCTGCATCGCCTTGTGTGGGCCAGAGCCATGGTCGGGGGGGCGGGTCCTGAGCTGACTCAGCTCCCTGCCCCAG
Seq C2 exon
GACACCAAGATGCCCGGTGAACAGCAGACGGAGGAGGAGGAGGAGGAAGAGATGCAAGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGAAGAGGGTGAAGAGAAGTATGAAGTGGTGAAACTCAAGATCCCTATGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021222:ENSBTAT00000002792:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.819
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF043938=DUF535=PU(42.7=93.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]