MmuINT0179837 @ mm10
Intron Retention
Gene
ENSMUSG00000054716 | Zfp771
Description
zinc finger protein 771 [Source:MGI Symbol;Acc:MGI:2442050]
Coordinates
chr7:127244274-127245134:+
Coord C1 exon
chr7:127244274-127244608
Coord A exon
chr7:127244609-127244984
Coord C2 exon
chr7:127244985-127245134
Length
376 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GATCCAGCGCCCCGCCTCAGGAC
3' ss Score
1.83
Exon sequences
Seq C1 exon
TCGGTGGGGCGTCAAGATCCAGCAGCGGCGGAGCCCGGCTGAGGGTGGTTGGAACTCGGCTGCAGGGCCTTGAAGGCCGGGCTAGGCATGGTCTGTTGGTTAGGAGTTTCCGGGCCGCGGACACCTCTGAGTCCCGGCTACCCCTCCCGGGGCGGTTAGGGACAGAAGCTCAGGCCTCCAGCCTCTCCCCTAGGGGCGGGGCCAGACGGGCGAACCAATGAATGTCCGCCCCTGGGGCCCCGCCCCGCCCCCGCCTCCGGAGCCGCGGCCTTCGCAGAGCACCCAACCGCCCCTCGCCCAGGCCCGGGGCCGCACGAGCACCGAACCTCGGGCTG
Seq A exon
GTGAGTGCGCACTCCACCCCGGGGCCTCAGCTCCAGCGGGCCTCCGGCTCATCCCTTAGCGCTCAGGTCGCCGACCCAGGCTCTGGGGAGTGACTCAGCGCGAGGAGGGTGGCAACTCGCGGGAGCTGGAGATTCGAACTGTTCAGGGCCCTGAATGTCGGGATGAGTGGGGTGAACGGGTGTCTTCTGAGCTGGGCCCTGGGCAGTGTCGGAGCGTGGGGTTGGGTTAGGGTGGATGGGAAAGGACTGGACTCGGAGCCTGGGCAGGGCGGGGGAAGCCACGGCTGCACCGCCTTGTCTGGGCCGGGGCCACAGTGGGGGTGGGGGTGGGGGTGGGGGGCGGGTCCTGAGCCTCTGATCCAGCGCCCCGCCTCAG
Seq C2 exon
GACACCAAGATGCCTGGCGAACAGCAGGCAGAGGAGGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGAGGAGGGTGAGGAGAAGTATGAGGTGGTGAAACTCAAGATCCCTGTGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054716:ENSMUST00000052509:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.840
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTTAGGAGTTTCCGGGC
R:
CTTCTCCTCACCCTCCTCCTC
Band lengths:
349-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types