HsaINT0188342 @ hg38
Intron Retention
Gene
ENSG00000179965 | ZNF771
Description
zinc finger protein 771 [Source:HGNC Symbol;Acc:HGNC:29653]
Coordinates
chr16:30407297-30408194:+
Coord C1 exon
chr16:30407297-30407664
Coord A exon
chr16:30407665-30408044
Coord C2 exon
chr16:30408045-30408194
Length
380 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GATCCAGCTCCCCGCCTCAGGAC
3' ss Score
4.18
Exon sequences
Seq C1 exon
TTTCGGGCGGAGCAGAGGCACTGGGCGCAGCGGAGACCTCCAAGCCGGCCCCAGGAGACGGGCCGCGAGGTTAGGTTGGAACTCGGCGGCAAGGACCTTGAACGCCGGGCTGGGGCGGCTCCAGGTGCTTGGGAGTCGGGGGACTGCGGAGGACGCCAAGTCTGAGCTCGCCGCCCTCTCCGAGCCGTTTGGGCCGGACGCCTGGGTCCTTCGGGCTCCGCCCCAGGGGGTGGGGCTATATGTTCGGACCAATGACCGGCCGTCCCTGCGGTCCCGCCCCCTCCCCGCCCCCGGAGCCGCGGCCTCGCTGAGTGCCCAGCCGCCCGGCGCCCAGGCCTGGGGCACCGCGAGTGCCGAACCTTCGGCTG
Seq A exon
GTGAGTGCGCACCCCCTCCCCGGGGTTTCCGCCCCGATCCCGCCTCCAGCCCGTGCCCCAGAGCTCCAGGTCGCCGACCCGGGCCCTGGGGAGTGACTCAGCGCAAGGATGGTGGCGACTTGCGGGGGCTGGAGATTCGAACTGTTCAAGGCCTTGAATGCTGGGATGAGTGGGGTGAACGCGAGCCCTCGGAGCTGGTCCCGGGGCTGTGCCAGAGCGTGGGGCCGGGCTGGGGTGGACGGGAGAGGACCAGATTCGGAGACCAGGGCAGGGCGGGAGAAGCCACGGCTGCACTGCCTTGCTGGGCCAGGGCCACGGTGGGCGGGGGGGGGGGTGGGGGGGGGCGGGTCCTGAGCTTCTGATCCAGCTCCCCGCCTCAG
Seq C2 exon
GACACCAAGATGCCTGGCGAACAGCAGGCAGAGGAAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGATGAGGGTGAGGAGAAGTATGAGGTGGTGAAACTCAAGATCCCCATGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179965:ENST00000319296:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.992
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGTTAGGTTGGAACTCG
R:
CTCCTCCTCTTCCTCTGCCTG
Band lengths:
349-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains