HsaINT0188342 @ hg19
Intron Retention
Gene
ENSG00000179965 | ZNF771
Description
zinc finger protein 771 [Source:HGNC Symbol;Acc:29653]
Coordinates
chr16:30418735-30419515:+
Coord C1 exon
chr16:30418735-30418985
Coord A exon
chr16:30418986-30419352
Coord C2 exon
chr16:30419353-30419515
Length
367 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTCCTGAGCTTCTGATCCAGCTC
3' ss Score
3.37
Exon sequences
Seq C1 exon
GCTCCAGGTGCTTGGGAGTCGGGGGACTGCGGAGGACGCCAAGTCTGAGCTCGCCGCCCTCTCCGAGCCGTTTGGGCCGGACGCCTGGGTCCTTCGGGCTCCGCCCCAGGGGGTGGGGCTATATGTTCGGACCAATGACCGGCCGTCCCTGCGGTCCCGCCCCCTCCCCGCCCCCGGAGCCGCGGCCTCGCTGAGTGCCCAGCCGCCCGGCGCCCAGGCCTGGGGCACCGCGAGTGCCGAACCTTCGGCTG
Seq A exon
GTGAGTGCGCACCCCCTCCCCGGGGTTTCCGCCCCGATCCCGCCTCCAGCCCGTGCCCCAGAGCTCCAGGTCGCCGACCCGGGCCCTGGGGAGTGACTCAGCGCAAGGATGGTGGCGACTTGCGGGGGCTGGAGATTCGAACTGTTCAAGGCCTTGAATGCTGGGATGAGTGGGGTGAACGCGAGCCCTCGGAGCTGGTCCCGGGGCTGTGCCAGAGCGTGGGGCCGGGCTGGGGTGGACGGGAGAGGACCAGATTCGGAGACCAGGGCAGGGCGGGAGAAGCCACGGCTGCACTGCCTTGCTGGGCCAGGGCCACGGTGGGCGGGGGGGGGGGTGGGGGGGGGCGGGTCCTGAGCTTCTGATCCAG
Seq C2 exon
CTCCCCGCCTCAGGACACCAAGATGCCTGGCGAACAGCAGGCAGAGGAAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGATGAGGGTGAGGAGAAGTATGAGGTGGTGAAACTCAAGATCCCCATGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179965-ZNF771:NM_016643:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF118743=DUF3394=PU(79.3=97.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGTGCTTGGGAGTCG
R:
ATCCTCCTCACCCTTCACCAG
Band lengths:
356-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)