HsaALTA0009913-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000179965 | ZNF771
Description
zinc finger protein 771 [Source:HGNC Symbol;Acc:29653]
Coordinates
chr16:30418618-30419515:+
Coord C1 exon
chr16:30418618-30418985
Coord A exon
chr16:30419353-30419365
Coord C2 exon
chr16:30419366-30419515
Length
13 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTCCTGAGCTTCTGATCCAGCTC
3' ss Score
3.37
Exon sequences
Seq C1 exon
TTTCGGGCGGAGCAGAGGCACTGGGCGCAGCGGAGACCTCCAAGCCGGCCCCAGGAGACGGGCCGCGAGGTTAGGTTGGAACTCGGCGGCAAGGACCTTGAACGCCGGGCTGGGGCGGCTCCAGGTGCTTGGGAGTCGGGGGACTGCGGAGGACGCCAAGTCTGAGCTCGCCGCCCTCTCCGAGCCGTTTGGGCCGGACGCCTGGGTCCTTCGGGCTCCGCCCCAGGGGGTGGGGCTATATGTTCGGACCAATGACCGGCCGTCCCTGCGGTCCCGCCCCCTCCCCGCCCCCGGAGCCGCGGCCTCGCTGAGTGCCCAGCCGCCCGGCGCCCAGGCCTGGGGCACCGCGAGTGCCGAACCTTCGGCTG
Seq A exon
CTCCCCGCCTCAG
Seq C2 exon
GACACCAAGATGCCTGGCGAACAGCAGGCAGAGGAAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGATGAGGGTGAGGAGAAGTATGAGGTGGTGAAACTCAAGATCCCCATGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179965-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF118743=DUF3394=PU(90.2=97.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGTGCCGAACCTTC
R:
CTTCACCAGCAGCACCATCTC
Band lengths:
104-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)