MmuALTA0020750-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000054716 | Zfp771
Description
zinc finger protein 771 [Source:MGI Symbol;Acc:MGI:2442050]
Coordinates
chr7:127244274-127245134:+
Coord C1 exon
chr7:127244274-127244608
Coord A exon
chr7:127244972-127245008
Coord C2 exon
chr7:127245009-127245134
Length
37 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTCCTGAGCCTCTGATCCAGCGC
3' ss Score
2.35
Exon sequences
Seq C1 exon
TCGGTGGGGCGTCAAGATCCAGCAGCGGCGGAGCCCGGCTGAGGGTGGTTGGAACTCGGCTGCAGGGCCTTGAAGGCCGGGCTAGGCATGGTCTGTTGGTTAGGAGTTTCCGGGCCGCGGACACCTCTGAGTCCCGGCTACCCCTCCCGGGGCGGTTAGGGACAGAAGCTCAGGCCTCCAGCCTCTCCCCTAGGGGCGGGGCCAGACGGGCGAACCAATGAATGTCCGCCCCTGGGGCCCCGCCCCGCCCCCGCCTCCGGAGCCGCGGCCTTCGCAGAGCACCCAACCGCCCCTCGCCCAGGCCCGGGGCCGCACGAGCACCGAACCTCGGGCTG
Seq A exon
CGCCCCGCCTCAGGACACCAAGATGCCTGGCGAACAG
Seq C2 exon
CAGGCAGAGGAGGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGAGGAGGGTGAGGAGAAGTATGAGGTGGTGAAACTCAAGATCCCTGTGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054716-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.840
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCAGAGCACCCAACC
R:
CTTCACCAGCAGCACCATCTC
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types