HsaALTA0009913-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000179965 | ZNF771
Description
zinc finger protein 771 [Source:HGNC Symbol;Acc:HGNC:29653]
Coordinates
chr16:30407297-30408194:+
Coord C1 exon
chr16:30407297-30407664
Coord A exon
chr16:30408032-30408068
Coord C2 exon
chr16:30408069-30408194
Length
37 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTCCTGAGCTTCTGATCCAGCTC
3' ss Score
3.37
Exon sequences
Seq C1 exon
TTTCGGGCGGAGCAGAGGCACTGGGCGCAGCGGAGACCTCCAAGCCGGCCCCAGGAGACGGGCCGCGAGGTTAGGTTGGAACTCGGCGGCAAGGACCTTGAACGCCGGGCTGGGGCGGCTCCAGGTGCTTGGGAGTCGGGGGACTGCGGAGGACGCCAAGTCTGAGCTCGCCGCCCTCTCCGAGCCGTTTGGGCCGGACGCCTGGGTCCTTCGGGCTCCGCCCCAGGGGGTGGGGCTATATGTTCGGACCAATGACCGGCCGTCCCTGCGGTCCCGCCCCCTCCCCGCCCCCGGAGCCGCGGCCTCGCTGAGTGCCCAGCCGCCCGGCGCCCAGGCCTGGGGCACCGCGAGTGCCGAACCTTCGGCTG
Seq A exon
CTCCCCGCCTCAGGACACCAAGATGCCTGGCGAACAG
Seq C2 exon
CAGGCAGAGGAAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGATGAGGGTGAGGAGAAGTATGAGGTGGTGAAACTCAAGATCCCCATGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179965-0-3,0-2,0-1,0-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.984
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGTGCCGAACCTTC
R:
CACCTCATACTTCTCCTCACCCT
Band lengths:
116-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains