MmuALTA0020750-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000054716 | Zfp771
Description
zinc finger protein 771 [Source:MGI Symbol;Acc:MGI:2442050]
Coordinates
chr7:134388040-134388648:+
Coord C1 exon
chr7:134388040-134388122
Coord A exon
chr7:134388486-134388498
Coord C2 exon
chr7:134388499-134388648
Length
13 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTCCTGAGCCTCTGATCCAGCGC
3' ss Score
2.35
Exon sequences
Seq C1 exon
GCCTCCGGAGCCGCGGCCTTCGCAGAGCACCCAACCGCCCCTCGCCCAGGCCCGGGGCCGCACGAGCACCGAACCTCGGGCTG
Seq A exon
CGCCCCGCCTCAG
Seq C2 exon
GACACCAAGATGCCTGGCGAACAGCAGGCAGAGGAGGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGAGGAGGGTGAGGAGAAGTATGAGGTGGTGAAACTCAAGATCCCTGTGGACAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054716-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.840
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGCACCGAACCTC
R:
CTTCACCAGCAGCACCATCTC
Band lengths:
105-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: