BtaALTD0024908-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016299 | ZNF784
Description
Bos taurus zinc finger protein 784 (ZNF784), mRNA. [Source:RefSeq mRNA;Acc:NM_001099731]
Coordinates
chr18:62371822-62374877:+
Coord C1 exon
chr18:62371822-62371922
Coord A exon
chr18:62371923-62372232
Coord C2 exon
chr18:62373102-62374877
Length
310 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTCTCCCTCTCCCCACTCAGGTC
3' ss Score
11.07
Exon sequences
Seq C1 exon
CGGGGGCGGGGCCTGGGCAGAAGATGGCCGCCGCGCGCCCGGAACCCCCGAGTCCGAGCTCAGCGGCCCCGGAGCCGCCATCCTCGGAACCTCCGGACGTG
Seq A exon
GTGCGGGCGAGGAAGGGGCCAAGGCTGGGAACTCGAGATGGCAGGAGGTCGCAGGGCTGGGGGCGGGACTTAGGACGGGGCGGGGGTGGCATTTATGGCTCCGGCTCTGGGGGCGGAGCTTCTCGGTGGGCGAGGGGACGGGGCTTATCGTGGAGCCAATGAGGGTGGTGGGTGGGGCCTGGGTGGGTGGACCCCGAGGAGGGGTGGGTGGGACATCTGAGCTGTTGATGAGTTCGGAGAGGAGTTCCAGGGGATGGAGTTTGTCTAATTAGGGGGCGGGGCCTCCGAAATTTTAGGGGTAGCGAACCAG
Seq C2 exon
GTCCTGGTGCATGATGATGGCCGCCCGGCCACCCCCCCGAGTGACCTCATCGAGATCCAGGTGGTGAAGGTGACGGACACCACCCTGGTCCCCGAGCCCCCGGAGCCAGGTTCTCTGCACTGTGCCTTGTGCCCGGCTGCCTTCCGGCTGGTCTCCGAGCTGCTGTTCCATGAACATGGTCACCTGGCGGGGGCTGAGGGTGGCGGGCAGGGTGGGGACCCCAGCCGGTGTCATGTGTGTGGCCACAGCTGCCCCGGCCCTGCCAGCCTCCGTGCCCACTATAGCCTGCATACGGGCGAGCGGCCCTACCGCTGCGCGCTCTGCCCCCGGGCCTTCAAGGCCCTGGCCCCTCTGCTGCGGCACCAGCACCGACACGGGGTAGAGCCGGGGGCCCCTCGGAGGCCCCCGGAGGCGGCGGCGGCGACTCCAGAGCAGCGGACCGGGGCGCCCCCGGAGAGGTCGGAGGTTGTGCTGGCGGCGGCAGCTGCGGGCGCGGCGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016299-0-1,1-1,2-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCCCCGAGTCCGAG
R:
CGTATGCAGGCTATAGTGGGC
Band lengths:
355-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development