BtaINT0166096 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016299 | ZNF784
Description
Bos taurus zinc finger protein 784 (ZNF784), mRNA. [Source:RefSeq mRNA;Acc:NM_001099731]
Coordinates
chr18:62371838-62374877:+
Coord C1 exon
chr18:62371838-62371922
Coord A exon
chr18:62371923-62373101
Coord C2 exon
chr18:62373102-62374877
Length
1179 bp
Sequences
Splice sites
5' ss Seq
GTGGTGCGG
5' ss Score
3.64
3' ss Seq
TTCTCCCTCTCCCCACTCAGGTC
3' ss Score
11.07
Exon sequences
Seq C1 exon
GCAGAAGATGGCCGCCGCGCGCCCGGAACCCCCGAGTCCGAGCTCAGCGGCCCCGGAGCCGCCATCCTCGGAACCTCCGGACGTG
Seq A exon
GTGCGGGCGAGGAAGGGGCCAAGGCTGGGAACTCGAGATGGCAGGAGGTCGCAGGGCTGGGGGCGGGACTTAGGACGGGGCGGGGGTGGCATTTATGGCTCCGGCTCTGGGGGCGGAGCTTCTCGGTGGGCGAGGGGACGGGGCTTATCGTGGAGCCAATGAGGGTGGTGGGTGGGGCCTGGGTGGGTGGACCCCGAGGAGGGGTGGGTGGGACATCTGAGCTGTTGATGAGTTCGGAGAGGAGTTCCAGGGGATGGAGTTTGTCTAATTAGGGGGCGGGGCCTCCGAAATTTTAGGGGTAGCGAACCAGGTAGGTTGGGAAGGTGACCCTCAAAGACAAAGGTGTGGGGTTATAGCTGGGGCATCCACGCTGGGGTGGGGTATGATTCTGCAGGGATCTGAGGGATGCGTCTTGATGCCCAGGAGAGGATTTGGGTGGAGGAAGAAATGACTGTTCCAGGAGACTTTGGACACGCGCTCAGGATGGGAGAGTACCTGAGGACATTCATTCATTCAACAGAATTTACTAGTCCTACTTGGACCAGAGAGATGGAGAGGCGAACGAATACATAAACTGTATTCTTTCGGAGCGCGCAGTGGAATAGGGGAAGAGACTCAATAAACCAGACTTAATTGTGATCTGGAAAGAGTGAGCTGAGAGAGTGGGGGGTAGGGGAGCTAAATTTAGACGAGAGCAGTCAGCTGTGTACCGGCTTATAGTTACACTGGGGTCAGAGAGAGAAGGAGGAGCTGGGTCATGGTGGATGTTAGATGACGGTTTGGGATTTTAAGTGCAATTGGAGTCATGTGACAGTTTTGAGTGGGAAAATGACTGCTGTCTGATTTCCATTTTTCAAAAGGTCATTCGGGCTGCTTTGGGGAGGTGGGTTATAAGGGAGCAGGCGTAGGCACAGAGACATTCAGAGGGTTAGGAAACTTGGCAAGAGATGATTGGCTTTTAAGTGCAGGTAGAGGAGAGAAATGGCTGGATCTGTGATGTATTTTGGGCAGGAGGGGAAGCCTTGATGGTCATAGGGCAGAATCCCGGAGGATAGAGAGCTGAATCTAGAAATCGAGGGGCCCAGTAGGCTGCAGAGAGCGTTTTAATAAGTGGGGCGTGTTGGGGGTGGGGTGTGGCAGAGTCCACAGGCTCCTCTGTTTCTCCCTCTCCCCACTCAG
Seq C2 exon
GTCCTGGTGCATGATGATGGCCGCCCGGCCACCCCCCCGAGTGACCTCATCGAGATCCAGGTGGTGAAGGTGACGGACACCACCCTGGTCCCCGAGCCCCCGGAGCCAGGTTCTCTGCACTGTGCCTTGTGCCCGGCTGCCTTCCGGCTGGTCTCCGAGCTGCTGTTCCATGAACATGGTCACCTGGCGGGGGCTGAGGGTGGCGGGCAGGGTGGGGACCCCAGCCGGTGTCATGTGTGTGGCCACAGCTGCCCCGGCCCTGCCAGCCTCCGTGCCCACTATAGCCTGCATACGGGCGAGCGGCCCTACCGCTGCGCGCTCTGCCCCCGGGCCTTCAAGGCCCTGGCCCCTCTGCTGCGGCACCAGCACCGACACGGGGTAGAGCCGGGGGCCCCTCGGAGGCCCCCGGAGGCGGCGGCGGCGACTCCAGAGCAGCGGACCGGGGCGCCCCCGGAGAGGTCGGAGGTTGTGCTGGCGGCGGCAGCTGCGGGCGCGGCGGTGGGGAAGCCCTTCGCCTGCAGGTTCTGCGCCAAGCCGTTCCGCCGCTCCTCAGACATGCTAGACCACGAGCGGGTGCACACGGGCGAGCGGCCCTACCACTGCGGCGTGTGCGGCAAGGGCTTCACCCAGTCCTCGGTGCTCAGCGTCCACGCGCGCATCCACACTGGCGAGCGCCCCTTCCGCTGCAGCCTCTGCGACCGCACTTTCAACAACTCCTCCAACTTCCGCAAGCATCAGCGCACCCATGTCCACGGCCGGGGCCGGGGGACTCTGGGGGCCCGCTGGCACCGGGGGCTGAGGGGCCGGGGAGCAGGTGTGGGGCAGGGAACCCTCCTGAAGAGGGGTGTGGGGAGACGGCCAGAGTAAAGGTGGAGGTCGACCAGTAGTCTGGGAGCGCACATTGCTGCAGAGGAGGAGTGGGTGGGTAAGAGAGGCCAGGGAGGACGAGGAGAGGTTCGGGGTGGGGTGACGTCAGAGCTCGCAGAGATGGCCACGAGCGGCCGGCGTGGGAGAGCGCACGGACAGCCAGGCTCAGGACGCTCACAAGTCACACAGCCCCTGCGTGTGGTTCCGAGAAAGGCACAGTGGCAGCCCTGTGGGTGCTAGAAACCTGAGCTGGATGTCATGGCCTCGTCCGCCTCCCCGATGGCTTGTCCTTGCGCAAGACATCACTTGTCGCAGCAGAGCCTGGGCACTTCTTGGGGCAGGGGGATCCAGGCCGGACCCTTTCGCCTACCTCACTGGATCACACTGACCCTGATACTGCCCACCTGTCCTCAGTCTGCCCGCTGGATCCTCCAATAAAGAAGCTGGGACCCTGTCACCTCAAAGCCAGAGGGTCCCCGAGTCACAGTGTCAAGGATGGAAGCCTGACCCTAAGGGTTTTGACACCAGGAGCCCGACCCCTGCTCCCATGGTGGTCCCTCCCCTAAGCCAGACTCCTCTTTCAAGACAACTAAAAAGATGGCCCACACTCAGCCAGCTGCTGCTCCCCTCTTAAAGCTGTCGGCTCAGAGCCCAGGCTCTCCTGGGGGCTACCAAGTAGCCCCCAGTGGATCTAATTCCCTTCCACTACCAATTGGGAGCAAAGAGCCTACAGGCCAGTCCCAGGCTATCCCACGGAAGGGTTGGTGGATGCCGATGGAGCTGTCCTGGAGGGCCTGTGGCGGGTGTGGGGCAGGAGATGAGTCATTGGGGTGGGGGCAGAGGAGGACCTGGGGGCTGGATGTGGGAGGCCTCCAGTGCTATTCCTATTAAAGGAATTTCTGAAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016299:ENSBTAT00000021685:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCCCCGAGTCCGAG
R:
CGTATGCAGGCTATAGTGGGC
Band lengths:
355-1534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development