HsaINT0188394 @ hg19
Intron Retention
Gene
ENSG00000179922 | ZNF784
Description
zinc finger protein 784 [Source:HGNC Symbol;Acc:33111]
Coordinates
chr19:56132107-56135941:-
Coord C1 exon
chr19:56135850-56135941
Coord A exon
chr19:56134011-56135849
Coord C2 exon
chr19:56132107-56134010
Length
1839 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGG
5' ss Score
6.48
3' ss Seq
TTTCTTCTCCTCTTGCCCAGGTC
3' ss Score
9.9
Exon sequences
Seq C1 exon
GGCTTGGGCACAAGATGGCCGCTGCGCGCCCAGAGGCCCAGAGTCGGAGCTCACCGACTCCGGAGTCGCGATCCCAGGAGCCACTGGACCTG
Seq A exon
GTGCGGGCAAGGAAGGGGCCTGGGCGTGGGGCTCGAGGTGGGAGGAGGTCGTAGTGTGGGGGGCGGGTCCGGGGCGTGGCCTATGAGGGGGTGGGCGAGGGAGGTATTTAGTGCTATGGCCCTGGGGGTGGGGCTTCTTGTGGTTTCGCGAGGGGCGGGGCAGGGGAGGAGACTATGTCATGGTGGGCGGGGTGGGGGAGGGACCTATGGGTGGTGGGCGGGGCCTGGATGGGGGCGGAGTCTGAGGACGGTGTTGTCTTGTGGGACGGGTTTGGGTCCAGGGAAGGGGGCTTACCAGGGATAATTTGCATAATTTGGGTGGAGCCTTGTAAGGGGCGGGGCCTCATAAATTCTAGGGCTAATTCTAGGGTAGAAGGTTGGGAAGGTGACCCTGAAAAACGTGGGGGATTATGATTGGAGCACCTATGTCGGGGTAGGGGATAATTCTTCAAGGGTCTTAGTGATGCTTCTCGAATGCCCAAGGGAGAATTTGGGGGTAGAAGTGGGTGGTCTAGGTGACTTTGGAACTTCCTCCACGTTACCCCACTCAGAATTAGACTAATTGAGGACATTCATTCATTCAACAAACATTTACTGAGCTCCTACTTCGGCTCTGTAAATAGAGAAGTGACCAAGACAGACAAGGGTTGTGTTCTTTTGGAGCCTGCAGTCTCTTGAGAGGAGAGAGACAATAAAGGAGAGTTACTGTGATATGTTCTATAAAGGAAATAAAAATTGAGCCAATTTCTATAAATTGAGCCAAGAGTAGGGGTGGGGCAGCTAAATTTAGACGAGAGAAGTCAGCTGGGTGCCGGCTTATGTTTAAGCTGGGGTCAGAGAGATAAGTGGAGCTACATCGCCACAGATATTATAGTGACGATTTGGGATAAGTCATTTGGAGCCACTGGAGGGTTTTGAGTGCGAAAAATGACTTGATCTGATTTACATTTTCAAAAGACCTTCAGGCTATTCCTGGGAGGTGGGTTACAAGCCAGCAGAAATAGGAACAGAGATGCCCTTGGGTTTTTCAATTTTGGAGGCGCCAAGTGATGGGGCTTTAACTAGGGTGGAGGACAAAAGGTGGGATCCATGATATATTTTGGACAGGAGAGGAAATGTTGATGAGGATACAACAGAATCCTGGAGGATGGGCCGGGCGCGGCGGCTCACGCCTGCAATCCCAGCACTTTAGGAGGCAGAGCCAGAAGGATCTCTTGAGCCCAGTAGTTGGAGACCAGCCTGGGCAACATAGTGGGACTCCCTCTACATTAAAAATAATAATAATAATTTTTGTTTGTTTTGCTGTCTAAGATGGAGTCTTGTTCTGTCGCCTGAGCTGGAGGGCAGTGGCATGATCACATCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCGTGTCTTAGTCTCCCGAGTAGCTGGGATTACAGGCAGCAGCCACAACACCTGGCTAATTTTTGCATTTTTAGTAGAAACGGTATTTGCCATGTTGGCCAGGCTGGTTTCGAACTCCTGACCTCAGGTGATCTGCCTACCTCAGCCTCCCAATGTGCTGGTATTACAGGCCTGAGCCACCGTGCCCAGCCAGAAATAATTTTTTTTTAACTAGCTGGATGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGGAGATGAAGTGGGAGGATCGCTTGAGCCCAGGAGGTCAAGGTTGCAATGAGCCACGATCGCGCCAGGGCAACAGAGTGAGGCCCTGTCTGAAAATAACAGAGGAGCCCAAGCTTTAATAATTGGGGCGTGCTGGGGCGGTCCTGAGGCAGGTTCCACAGGCTCCTCTTTCTTCTCCTCTTGCCCAG
Seq C2 exon
GTCCTGGTGCCTGATGACTGCCGGCCTGGCACACCCCCGAGTGACCTCATCGAGATCCAGGTGGTGAAGGTGACGGACACCACGCTGGTCCCTGAGCCCCCGGAGCCAGGTTCTTTCCACTGTGCCTTGTGCCCTGCTGCCTTCCGGCTGGTTTCCGAGCTGCTGTTCCACGAACATGGCCACTTGGCTGGGGCCGAGGGAGGCGGGCAGGGTGGGGACCCGAGCCGGTGCCACGTGTGCGGCCACAGCTGCCCGGGCCCCGCCAGCCTGCGCGCGCACTACAGCTTGCACACGGGGGAGCGGCCCTACCGCTGCGCGCTCTGCCCCCGCGCCTTCAAGGCCTTGGCGCCCCTGCTCCGGCACCAGCACCGGCACGGGGTGGAGCCGGGCACCTCTCGGAGGCCTCCGGACACAGCGGCCGTTGCAGAACAGAGGCCCGGGGTGGCCCCGGAGAGGGCGGAGGTGGTGATGGCGGCGGCGGCGGCGGGCGCAGCGGTGGGGAAGCCTTTTGCCTGCAGGTTCTGCGCCAAGCCCTTCCGCCGCTCCTCAGACATGCGAGACCACGAGCGCGTGCACACTGGCGAGCGGCCATACCATTGCGGCATCTGCGGCAAGGGCTTCACCCAGTCCTCGGTGCTTAGCGGCCACGCCCGCATCCACACTGGCGAGCGCCCGTTCCGCTGCACGCTCTGCGACCGCACCTTCAACAACTCCTCCAACTTCCGCAAGCACCAGCGCACCCACTTCCACGGGCCGGGGCCGGGGCTGGGAGACTCTGGAGGCCAGCTGGGCTCGTCGGCGGCTGAGGGGTCGGGGAGCGGGTGTGGGGTAGGGGACCCTGCGGAGGAGGGGCGGGGGGAGACCGCGAAGGTGAAGGTGGAGGCCGACCAGTAGGCTGCAGACCAGGGACATGGGTTAGTTAAGGCGGAGGTACGAGGCCGACCCGGGGAGGGGGACGGGGTGGGGAAACGGAGGCAGGGGACAGAAGAGGGGAGATTGGGGGAGAGATGACAGCTGCAGGGATGGTTGTGAGCCGCTAGTGATGGAGAGCAGAGGGAGAGGGCCAGGCTCCAGACTCCCACACGCCCACACAGCACCTCTGCCAGGCCTAGGAGAGGACAGGTGCAGCTCTTGCAGCTCTGCGGGTGTGCGGCCAAAGGCAAGGCCCACGGGCTGGATGTCACTTCCCCGACTGTCTCTTGGTTGGCTTGTCCTTGTGCAAGACCCAGCCTGTCACGACAGAGCCTGGGCACTTCAGAGGAGGAGCCAGGATCGAATGGAAGGGGGGAATTGGGGTCCACCATAGTCTTCTGCTCTGGTCCTCCACGGGTGGACCAGGATGGAGTCTCCTGCCTACCTCACTGCATTGCACTGGACCTGGGATGCCTATCCACCCTCTGGCAGAAGACACTCACCAGGTTATCTGTGAAGAGACTCTGGGATCCCATCACCTCAAAGCCAGAGGGTCCCCAAGTCACCGCTGAGAGCACTTGAGCCTCAAGGATGTAAGCCTGACCATAGGATCTTGACTCCAACAGCGGCAACCCCCACCCCCATTGTGGTCCGTCCTTAACCCATCCACTCTTCTTCGGAGGCAACTGAGAACACATAAAGCAAGCAGCTACCTAGCATCCCCCTCCTAAAGCTTTAGACTCAGAGCCCAGGGTCCCCCACAAGCCTCAAGGTAGCCTCAGGTTTCTCTAATTTCCTCCACTCCCAGTTCGAAGCAAACAGCTTACTGCCTAGTCCCCGCCAATCCCAAGGGCGGGCTGGCTGATGGCAGCATGGTGGGCTGGCCTGGGTGTGGAGTGAAAGAGTCACTGTGGTGGGGGCGAGAGGAGGACTTGGGAGCTGGAGGTGTGACACCTTCAGTTCTGTTCCTATTAAAGGACCTTCTGAAGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179922-ZNF784:NM_203374:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCCCAGAGTCGGAG
R:
CCCGTGTGCAAGCTGTAGTG
Band lengths:
358-2197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)