RnoINT0168711 @ rn6
Intron Retention
Gene
ENSRNOG00000016279 | Zfp865
Description
zinc finger protein 865 [Source:RGD Symbol;Acc:1565545]
Coordinates
chr1:72356880-72361358:+
Coord C1 exon
chr1:72356880-72356990
Coord A exon
chr1:72356991-72359105
Coord C2 exon
chr1:72359106-72361358
Length
2115 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGG
5' ss Score
6.48
3' ss Seq
TTTCTTCTTCTGCTCTCCAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
TCTTTGCCCTCAGGGACAGGGCTTAGGTACAAGATGGCCGCCGCGCGCCCGGATCCCCCGATTCCGAGCTCACCGACCCAGGAGTCGCTATCCCCGGAGCCGCCGGACCTG
Seq A exon
GTGCGGGCGATGAAGGGGGTCTGGGCCGGGGGTTCACGGCGAAGACATCGCAGGGCAGGGGGCGGGGTCAAGGCGGGGCCTAGGAGAATTGGGCGGGGGTATGGTAACACTCTGGGGCGGGGTTTAAGGAGGAGCCTATTGGGAATGAGGAGCAAGGCCTGGTTGAGGTGGGTCCTGAGGACAGGTTGTGTCTTGGGCCTGGATGAGTACTGGGAGAAGACAAGGGGTGTTATTTGCATAAAGAAGTGTGGAGTCTTAAATGGGAGGGGCATCAGGGAAATTATAGGGCTAGTGGATGGTTGGGAAGGTGACCTCAAAGGAGAGCTATAATCCTGTCACCATGTTGGGATGGCATTTGATGATATAAGGACTGCCTTACGAATGCGCAAGGGAGGAGATATGGGAGCTTCAGATGACTTTAGAACTTCTAACTAGTGACTGAAAAGTAACTCAAAATATAGGTTCATTCAGCAAACATTTAAAGTTCCAGGGGATCAAAATGGACAACGATTGCGTTCTCTTGCAGCTTGCAGTCTTATGAGGAGAAAAAGTGATGATAAAGAGAATTTATGTCCTATAAGAGAAATAAGACGTAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAACGCAAGGCCCTGGGCTCGGTCCCCAGCTCCGAAAAATAGAAAAAAGAAAAAAAAAGAAAAGAAAAAAAAAAGAGAAATAAGACGTACACTCAGAGTGGGGGTGGTGGGAGCTAAATTGAAATGGCAGAAGTCAGCTGGGTGCCGGCTTATATTTACACTGTAATCGGTGAGATAAGCAGGATCCAGATCATGTTTGATATTATAGGAAGGACACGAGGTTTTAAGTGCAACTGGAGGGCTTGGAGTGGTGAAAAGTGATGACCTCATCTACATTTTCCAAGGTCCATTTGGGCACTCTAGGAGAGGTGGATAATGAGGGGCAGAGGCAGGAACAGGGATTCCCTTTGAGTGATGTTTTGCATTCTAAGGGGAATAAATTATGAGGCTTTTAACTAGTACAGAGGAGAGGCACCCCCATGTCTATGGTATATTTGGGGCAAGAAGGGGAAAATGTCAGAATGGATCCAGCAAGAATTCTGGATCATGGATAACAGGGTTAAGAAACCAAGGGATGAGGCTGAAGAGGTGGCTCGGCCTTAAGAGTACTGACAGAGAAGCCTTTCGGAAAGTCTTTTAATAGGAACAGACTGGAAGTCCCCACTCTCACCCCATACTACAATTCCCAAGTCCTTTTAGCCCCTTACCATGGTATCATCTCTTTCTTTACACCCTGACCACCATGGGTGTCATCAGCTAACCCTGCCTCAGAATTGCCCAGGACTAAGCAAGAAGCTGTTCAGTTCCCAGCATCCACATGGAGGCTCACAACCATCTGTAACTCCACTTCTAGATGATCTGACCCTCACTCCTGGCCTCCATGGACACTGACATGGTGAACATACATGCAGGCTCTCACATAACACAGAAAGAAATACTTAGGCTTGGTGGCAGGCACATGCCTTTAATCCTGACACTCGGGAGGCAGAGGCAGGCAGACCTTTGTGAGTTCTAGGCCAAACTAGTCTACACAGCAAGTACCAAACCAGCTAGAGCTACATAGTGAAACCTTGTCTCTAAGTAAGTAAACAATAAATCATTTTTTAAAAAAAACAGGATACGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCCGTCCCCAGCTCCGGAAAAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAACAGGATACAATGGACTTCAGAGAAGCAAATATTTTATTTTTCATGTATTTACTTATGTGAAGAGAGTATGTGCGTGTGTGTGCTATAGCACAAGTTATTTGGAGGGCGGAGGGCATCTCGAGAAAGTCAGTTCTGTCTTTCCACCCTGTGGGTCCCAGGGATCGTACTCAGGCCGTTAGATCTGGTAAGTGTCTTTACCACTGAGCCATCTTCACAGCCCAGGCAACTGTTTTAATAAGTGGAGGCATACTGAAGAAAGTTCTTCAAGCCGGGTCCACAGCCTCCTGTTTCTTCTTCTGCTCTCCAG
Seq C2 exon
GTCCTGGTGCCTGATGGTGGCCGCCCTGCCACACCCCCAGGGGACCTCATCGAGATCCAGGTGGTCAAAGTCACAGATACTACATCGGCCCCTGAGCCCCCAGAGCCAGGATCTTTTCATTGTGCCCTGTGTCCTGCTGCCTTCCGTCTAGTCTCGGAGCTGCTGTTTCATGAGCATGGTCACCTGGCAGGCTTGGAAGGGCTTGGGCAAGGTGGGGACCCTAGCCGTTGTCACGTGTGTGGCCACAGCTGTCCAGGTCCTGCTAGCCTGCGTGCACACTACAGCTTGCACACAGGAGAACGACCTTACCGCTGCCCTCTCTGTCCACGGGCTTTTAAGGCCTTGGCACCCCTGCTCCGGCACCAGCACCGACATGGGGTGGAGCCAGGCACCCCTGGAAGGCTTCTACCCACAGCAGCAGCAGGACAGCCGAACTCAAGGGTGGCCCAGGAGAGGTCGGAGGTGGTGATGACTGCAGCAGCTGCGGGTGCTGTGGTAGGCAAGCCTTTCGCCTGCAGGTTCTGTGCCAAGCCCTTCCGCCGCTCCTCAGACATGCGAGACCACGAGCGGGTACACACGGGGGAGCGGCCCTATCACTGTGGCATCTGTGGCAAAGGCTTCACTCAGTCCTCTGTTCTGAGCGGTCATGCTCGCATCCACACGGGCGAGCGCCCCTTCAGATGCATGCTCTGCGACCGCACTTTCAATAACTCCTCCAACTTCCGCAAGCACCAGCGTACCCATTTCCATGGGCCAGGGCCCGGAGTGGGAGAGTCTGGAGGCCAACTGAGATCATCTTCGGTATCCCAAGAATCAAGGAGTAAATGTGGGACAGAGAACACTATGGAAGAAGGGTGTAGAGAGACTAAGAAGGTGAATGTGGAGGTTGATCAGTAGGCTGGAAATAGGAAGCATATCATAGGAAATGTAGGTGGGCAAATTGAGGGAGAGATCAAGAGGCCAAGGAGAAATAATGAGGAATTGGAGTTAGATTTAAAAAGGGAACCTGATTGTGGTCTCCCAGAACCCCATGCTGCACCTGAGACTCAGGAAAGAGGTACTTGTGGGTCTGTGGGTGCCCAGATATGTCCCAGTACACTAGAGACTGAGGCAGAAGGATCTGGTCCAGACTGGGCTGGAGAGCAAGACTTTATGTAGCAACACCTCTGGTCCAATAAAATATTTTGCCTACCTCAACTGGATTGCACTGGTCCTGGGATGCCTACCCTGCGGTGCAGAAGATGCCCACTAGGCCATCTCTAAAGGGAGGCTGGGATACCTTCCCCTCGAAACCATGAAGTATCTAAACCACATCTCTCGGATGTGAACCTGCTCATATTCACTCTAAGCTCTGCCTACTTCTCCATCCTACCCCATAGTGGTATCTCTTTAACCCACTAAACTCCTCCTCTTCTTTTTTTTTTTTTTTTTTTTTTCCGGGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAAGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCACTAAACTCTTCTGGAAGCAACTGAGAGCACATACTACAAGCAGGCATTCACTTGGTGTCCCCTTAAACCTTAGGCTCAGAGCCTGTGGTTTCCCATGTCTACAAAGTTTCAGATCTCTATTCTCCACTCTCAGGTAGACAGCTTCTTGGGCAATTCTGAGGCAGGGTTAGCTGATGACAACCTTGGTGGGCCAGTACAGGGTGTAAAGTAAGAGATGATACCATGGTAAGGGGCTAAAAGGATTTGGGAGTTGTAGTATGGGGTGAGAGTGGGAACTTCCAGTCTGTTCCTATTAAAAGACTTTCTGAAAGGTTTCTGTCAGTCTTGTATTCCAGTTCTCTGGGTAATTATCCATTATCTGAAATGGTGAGTGACCAGGCTTGGGTTGTTTGTAGATGGCTCTTTGGTAGTATTGTAAGTTCTGTGTAAGGAAGGGGTGTTGAGGTTGGTGTGCTTACTCAGAAGGGTCCCTAGTTTTCTCATGGAGAAGATGTGTTTCTAGTTCACTCCTCCTTCATCCAGCATCCCCAAGAGGTGACCCTTGGATGATGCAGAGTAAAAACTCCACCACTTCCTCCAAAGAAAGGAGCCTGCTTCTGGAGACAACAGAATGTCTTTGCTTTCTCACGTGGATCCTTGCCACTGAACAGAAATCCCCTGCTGTCTTCAGAGGGGACTACCAACACAGCAGCCGTGTGGATAAGGGACCAGATTCAATGAGAGGTGAAATATAGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016279:ENSRNOT00000021917:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.497
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]