RnoALTD0034654-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016279 | Zfp865
Description
zinc finger protein 865 [Source:RGD Symbol;Acc:1565545]
Coordinates
chr1:72356890-72361358:+
Coord C1 exon
chr1:72356890-72356990
Coord A exon
chr1:72356991-72357157
Coord C2 exon
chr1:72359106-72361358
Length
167 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TTTCTTCTTCTGCTCTCCAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
CAGGGACAGGGCTTAGGTACAAGATGGCCGCCGCGCGCCCGGATCCCCCGATTCCGAGCTCACCGACCCAGGAGTCGCTATCCCCGGAGCCGCCGGACCTG
Seq A exon
GTGCGGGCGATGAAGGGGGTCTGGGCCGGGGGTTCACGGCGAAGACATCGCAGGGCAGGGGGCGGGGTCAAGGCGGGGCCTAGGAGAATTGGGCGGGGGTATGGTAACACTCTGGGGCGGGGTTTAAGGAGGAGCCTATTGGGAATGAGGAGCAAGGCCTGGTTGAG
Seq C2 exon
GTCCTGGTGCCTGATGGTGGCCGCCCTGCCACACCCCCAGGGGACCTCATCGAGATCCAGGTGGTCAAAGTCACAGATACTACATCGGCCCCTGAGCCCCCAGAGCCAGGATCTTTTCATTGTGCCCTGTGTCCTGCTGCCTTCCGTCTAGTCTCGGAGCTGCTGTTTCATGAGCATGGTCACCTGGCAGGCTTGGAAGGGCTTGGGCAAGGTGGGGACCCTAGCCGTTGTCACGTGTGTGGCCACAGCTGTCCAGGTCCTGCTAGCCTGCGTGCACACTACAGCTTGCACACAGGAGAACGACCTTACCGCTGCCCTCTCTGTCCACGGGCTTTTAAGGCCTTGGCACCCCTGCTCCGGCACCAGCACCGACATGGGGTGGAGCCAGGCACCCCTGGAAGGCTTCTACCCACAGCAGCAGCAGGACAGCCGAACTCAAGGGTGGCCCAGGAGAGGTCGGAGGTGGTGATGACTGCAGCAGCTGCGGGTGCTGTGGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016279-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.497
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAGGTACAAGATGGCCGCC
R:
ACAGCAGCTCCGAGACTAGAC
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]