MmuINT0179871 @ mm9
Intron Retention
Gene
ENSMUSG00000043290 | Zfp784
Description
zinc finger protein 784 [Source:MGI Symbol;Acc:MGI:3606042]
Coordinates
chr7:4986048-4990048:-
Coord C1 exon
chr7:4989937-4990048
Coord A exon
chr7:4988082-4989936
Coord C2 exon
chr7:4986048-4988081
Length
1855 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGG
5' ss Score
6.48
3' ss Seq
TTTTTTCTTCTGCTCTCCAGGTC
3' ss Score
11.11
Exon sequences
Seq C1 exon
ATCTTTGCCCTCAGGGACCGGGCTTAGGTACAAGATGGCCGCCGCGCGCCCGGATCCCCCGATTCCGAGCTCACCGACCCGGGAGTCGCCATCCCCGGAGCCGCCGGACCTG
Seq A exon
GTGCGGGCGACGAAGGGGTCTGGGCCGGGGGTTCACAGCGAAGAAGATCGCAGGGCAAGGGGCGGGGTCAAGGCGGGGCCTAGAACAATTGGGCGGGGGTATGGTAACCCTCTGGGGCGGGGTTTAGGGAGGAGCCTATGGGGAATGAGGAGCGAGGCCTGGTTGAGGCGGGTCTTGAAGACAGCTTGTGTCTTGGGCTTGGTTGGGTCCAGGGAGAGGACAAGGGAGCTTGCATAAAGAAGTGTGGCATCTTAAGAGGGGCGGGGCACCAGGGAAATTATAGGGCTAGTGGATGGTTGGGAAGGTGACCCCAAAGGAGAGCTATAATTCGGTCACCGTGTTGGGATGGCATGTGATGATACAAGGACTGACTGCCTTACAAATGCCCAAGGGAGGAGAAATGGGTGCTTCGGATGACTTTAGAACTTATAACTAGTAACTGGAAAGTAACTGAAAATATTGGTTCATTCAGCAAACATTTAAAGCTCCAGGGGACCAAAATGGACAACGATTGCGTCCTCTTGCAACTTGCAGTCTTATGAGGAGAAAAAGTGACGATAAAGAGTATTGTAATATGTCCTATAAGAGAAATAAAAGGTGCACTTAAGAGTGGGGGTGGAGCAAGCTAAATTTAAATGGCAGAAGTCAGCTGGGTGCCGGCTTATGGTTGCAATGTAGTCAGTGAGATAAGCAGGATCCAGATCGTGTTGGATATTATAGGAAGGACACGAGGTTTTAAGTGCAATCGGAGGACTTGGAGTGGCGAAATGTCATGACCTCATTTGCATTTTCCAAAGTCCATTTAGGGTGCTCTAGAAGAGGTGGATAATGAGGGGCAGAAGCAGGAACAGGGGTTACCTCTGAGTGGTGTTTTTCATTCTAAGGGGGGAATTATGAGACTTTTAACTAGTACAGAGGAGAGGTACCACCGTGTCTGTGGTATATTTGGGTCAAGAAGGGGAAATGCCAGAACAAGGATCCATCAAAAATTCGGTATCATGGATAACAGGGTTAAGAAATCAAGGGATACGGCTGGAGAGATGGCTCAGCATTTAAGAGCCCTGGCTGCACTTTTAGAGGTTCAGTTCCGGGCATCCGCATGGAGGCTCACAACCACCTGTGACTCCATTCCTAGAGGATCTGACCCTCACTCCTGACCTCCATGGACAGTGACACACACAGTGAACACACATGCAGGCTCTCACACAGAACAGAACATGAAATACTTGGGCTTGATGGCAAGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGACCTTTGTGAGTTCTAGGCCAAACTAATCTACACAGCAAGTACCAAACCAGCCAGGGCTACATAGTGAAACCTTCTAAGTAAATAAATAACAAATCATTAAATATATATATGCCAGGCGGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAAAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGGAAAAAAAAATACAGTGGACTTCAGAGGAGCAAACATTTTATTTAAATTTTTATTTTTCATTTATTATGTGAGGAGAGGGTGTGAGTGTGTGCCATGGCACAGGAATTTGGAGGTCAGAGGGCATCTCAGGAAGTCAGTCAGTCTGTCTTTCCACCCTGTGGGTCCCAGGGATCATACTCAGGTCGTCAGATTTGGTAAGTGTCTTTACCCACTGAGACATCTTCACTGCCAAAGCAAGTGTTTGAATAAGTGGAGGCATTATTGAATGAAGACTCTCTCCAAGCAGGTCCACAGCCTCCTGTTTTTTCTTCTGCTCTCCAG
Seq C2 exon
GTCCTGGTGCCTGATGGTCGCCCTGTCACACCCCCAGGTGACCTCATCGAGATCCAGGTGGTAAAAGTCACAGATACCACATCGGTCCCTGAGCCCCCAGAGCCAGGATCTTTTCATTGTGCCCTGTGTCCTGCTGCCTTCCGTCTAGTCTCAGAGCTGCTGTTTCATGAGCATGGCCACCTGGCAAGCATGGAGGGGCTTGGGCAGGATGGGGATCCTAGCCGTTGTCATGTGTGTGGCCACAGCTGTCCAGGTCCTGCTAGCCTGCGTGCCCATTACAGCTTGCACACAGGAGAACGGCCTTACCGCTGTTCCCTCTGCCCACGGGCTTTTAAGGCCTTGGCACCTCTGCTCCGGCACCAACACCGACATGGGGTAGAGCCCGGCACCTCTGAAAGGCTTCTACCCACAACAACAACCGGACAGCCAAACTCAAGGGTGGCCCAGGAGAGGTCGGAGGTGGTGATGGCTGCAGCAGCTGCGGGTGCTGTGGTAGGCAAGCCTTTCGCCTGCAGGTTTTGTGCCAAGCCCTTCCGACGCTCCTCAGATATGCGAGACCACGAGCGGGTGCATACAGGGGAGCGGCCCTACCACTGTAGTATCTGTGGCAAAGGCTTCACGCAGTCCTCTGTGCTGAGTGGTCATGCCCGCATCCACACAGGCGAGCGCCCCTTCCGATGCATGCTCTGTGACCGCACTTTCAATAACTCCTCCAACTTCCGCAAACACCAGCGCACCCACTTCCATGGACCAGGGTCTGGAGTGGGAGAGTCTAGAGGCCAACTGAGATCATCTTCAGTGTCCCAAGAATCATGAAGTAAATGTGGGACAGAGAACACTATGGAAGAAGGGTGTAGAGAGACTGTGAAAGTGAATGTGGAGGTTGACCAGTAGGCTGGAAGCTAGGACATATCGTAGGAGAGGTGGGTGGGCAAATAGAGGCAGAGGCCAAGGAGAAATCATGAGCAGTTGGAGTTAGATGAAAAAGGGAACCTGGTTCTGGTCTCCCAGAAACCCATGCTACACTTGAGACTCAGGAAAGAGGTACTTGGGGTCTGTGGGTACCCAGATATATCTAAAAATACATAGACAGCTGGGCATGGTAAAGGCCTGTAATCCCAGTACACTAGAGGCTGAGGCAGGAGGATCATGAGGTCCAGACCAGACCAGGCTGGAAAGCAAGACTTTCTGTACCACCACCTCTGGTCCAATGAAATGTTTTGCCTACTTCAACTGGATTGCACTGGTCCTGGGATGCCTACCCTCCAGTGCAGAAGATGCCCACCAAGTCATCTCTAAAGGGATGCTGGGATACCTTCCCCTCAAAACCGAGAGTACCTAAACCACATCTCTCAGATGTGAACCTGCTCATAAAGATTCACTCTAAGCCCTGCTCACTTCTCCATCCTACCCCATAGTGGGCTCTCTTTAACCCACTAAACTTAGTTGCAAGCAACTGAGAGCACACACTATAAGCAGGCAATCACTTGGTATCCCTTTAAGCCTTAGGCTCAGAACCTGTCTATAAAGAAATTTCCCATCTCTCTATTCTGCACTCTGAAGTAGGCATCTTCCTGCATAGCCCTGGGCAATTCTGAGGCAGGGTTAGCTAGTGACCACCTTGGTGGGCCAGTACAGGGTGTAAAGAAAGAAATGACACTGTGGTAAGGGGCTAAAAGGACTTGGGAGTTAGCGTACAGGGTAAGAGTGGGGACTTCCAGTCTGTTCCTATTAAAAGACTTTCTGTAAGTCTTCTCTGTCAGTCTTGTATTCCAATTCTCTGGGTAGTTATCCATTATCTGGAATGGTGAGTGACCAGGCTTGGGCTGTTTGGAGATGTCTATTTGGTTGTGTTGTAAGAAGTTTTGTGCAATGAGGTGATGTAGGAGGTTGGTGTACTTACTCAGAAGGGTCCCTAATTTTCTCATGGAGATGTGTTGCTAGTTCAGTCCTTGTCATCCAGCATCCCCAAGAGACGATCCTCGGATGATGCATAATAAAAACTCACCAGCTCCTCCAAAGAGCCTGCTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043290-Zfp784:NM_001039532:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.458
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=9.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAGGTACAAGATGGCCGCC
R:
CTAGCAGGACCTGGACAGCT
Band lengths:
353-2208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: