HsaINT0188394 @ hg38
Intron Retention
Gene
ENSG00000179922 | ZNF784
Description
zinc finger protein 784 [Source:HGNC Symbol;Acc:HGNC:33111]
Coordinates
chr19:55620742-55624601:-
Coord C1 exon
chr19:55624484-55624601
Coord A exon
chr19:55622645-55624483
Coord C2 exon
chr19:55620742-55622644
Length
1839 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGG
5' ss Score
6.48
3' ss Seq
TTTCTTCTCCTCTTGCCCAGGTC
3' ss Score
9.9
Exon sequences
Seq C1 exon
AGAGCGAACATTGGCCTTGGGGGCGGGGCTTGGGCACAAGATGGCCGCTGCGCGCCCAGAGGCCCAGAGTCGGAGCTCACCGACTCCGGAGTCGCGATCCCAGGAGCCACTGGACCTG
Seq A exon
GTGCGGGCAAGGAAGGGGCCTGGGCGTGGGGCTCGAGGTGGGAGGAGGTCGTAGTGTGGGGGGCGGGTCCGGGGCGTGGCCTATGAGGGGGTGGGCGAGGGAGGTATTTAGTGCTATGGCCCTGGGGGTGGGGCTTCTTGTGGTTTCGCGAGGGGCGGGGCAGGGGAGGAGACTATGTCATGGTGGGCGGGGTGGGGGAGGGACCTATGGGTGGTGGGCGGGGCCTGGATGGGGGCGGAGTCTGAGGACGGTGTTGTCTTGTGGGACGGGTTTGGGTCCAGGGAAGGGGGCTTACCAGGGATAATTTGCATAATTTGGGTGGAGCCTTGTAAGGGGCGGGGCCTCATAAATTCTAGGGCTAATTCTAGGGTAGAAGGTTGGGAAGGTGACCCTGAAAAACGTGGGGGATTATGATTGGAGCACCTATGTCGGGGTAGGGGATAATTCTTCAAGGGTCTTAGTGATGCTTCTCGAATGCCCAAGGGAGAATTTGGGGGTAGAAGTGGGTGGTCTAGGTGACTTTGGAACTTCCTCCACGTTACCCCACTCAGAATTAGACTAATTGAGGACATTCATTCATTCAACAAACATTTACTGAGCTCCTACTTCGGCTCTGTAAATAGAGAAGTGACCAAGACAGACAAGGGTTGTGTTCTTTTGGAGCCTGCAGTCTCTTGAGAGGAGAGAGACAATAAAGGAGAGTTACTGTGATATGTTCTATAAAGGAAATAAAAATTGAGCCAATTTCTATAAATTGAGCCAAGAGTAGGGGTGGGGCAGCTAAATTTAGACGAGAGAAGTCAGCTGGGTGCCGGCTTATGTTTAAGCTGGGGTCAGAGAGATAAGTGGAGCTACATCGCCACAGATATTATAGTGACGATTTGGGATAAGTCATTTGGAGCCACTGGAGGGTTTTGAGTGCGAAAAATGACTTGATCTGATTTACATTTTCAAAAGACCTTCAGGCTATTCCTGGGAGGTGGGTTACAAGCCAGCAGAAATAGGAACAGAGATGCCCTTGGGTTTTTCAATTTTGGAGGCGCCAAGTGATGGGGCTTTAACTAGGGTGGAGGACAAAAGGTGGGATCCATGATATATTTTGGACAGGAGAGGAAATGTTGATGAGGATACAACAGAATCCTGGAGGATGGGCCGGGCGCGGCGGCTCACGCCTGCAATCCCAGCACTTTAGGAGGCAGAGCCAGAAGGATCTCTTGAGCCCAGTAGTTGGAGACCAGCCTGGGCAACATAGTGGGACTCCCTCTACATTAAAAATAATAATAATAATTTTTGTTTGTTTTGCTGTCTAAGATGGAGTCTTGTTCTGTCGCCTGAGCTGGAGGGCAGTGGCATGATCACATCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCGTGTCTTAGTCTCCCGAGTAGCTGGGATTACAGGCAGCAGCCACAACACCTGGCTAATTTTTGCATTTTTAGTAGAAACGGTATTTGCCATGTTGGCCAGGCTGGTTTCGAACTCCTGACCTCAGGTGATCTGCCTACCTCAGCCTCCCAATGTGCTGGTATTACAGGCCTGAGCCACCGTGCCCAGCCAGAAATAATTTTTTTTTAACTAGCTGGATGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGGAGATGAAGTGGGAGGATCGCTTGAGCCCAGGAGGTCAAGGTTGCAATGAGCCACGATCGCGCCAGGGCAACAGAGTGAGGCCCTGTCTGAAAATAACAGAGGAGCCCAAGCTTTAATAATTGGGGCGTGCTGGGGCGGTCCTGAGGCAGGTTCCACAGGCTCCTCTTTCTTCTCCTCTTGCCCAG
Seq C2 exon
GTCCTGGTGCCTGATGACTGCCGGCCTGGCACACCCCCGAGTGACCTCATCGAGATCCAGGTGGTGAAGGTGACGGACACCACGCTGGTCCCTGAGCCCCCGGAGCCAGGTTCTTTCCACTGTGCCTTGTGCCCTGCTGCCTTCCGGCTGGTTTCCGAGCTGCTGTTCCACGAACATGGCCACTTGGCTGGGGCCGAGGGAGGCGGGCAGGGTGGGGACCCGAGCCGGTGCCACGTGTGCGGCCACAGCTGCCCGGGCCCCGCCAGCCTGCGCGCGCACTACAGCTTGCACACGGGGGAGCGGCCCTACCGCTGCGCGCTCTGCCCCCGCGCCTTCAAGGCCTTGGCGCCCCTGCTCCGGCACCAGCACCGGCACGGGGTGGAGCCGGGCACCTCTCGGAGGCCTCCGGACACAGCGGCCGTTGCAGAACAGAGGCCCGGGGTGGCCCCGGAGAGGGCGGAGGTGGTGATGGCGGCGGCGGCGGCGGGCGCAGCGGTGGGGAAGCCTTTTGCCTGCAGGTTCTGCGCCAAGCCCTTCCGCCGCTCCTCAGACATGCGAGACCACGAGCGCGTGCACACTGGCGAGCGGCCATACCATTGCGGCATCTGCGGCAAGGGCTTCACCCAGTCCTCGGTGCTTAGCGGCCACGCCCGCATCCACACTGGCGAGCGCCCGTTCCGCTGCACGCTCTGCGACCGCACCTTCAACAACTCCTCCAACTTCCGCAAGCACCAGCGCACCCACTTCCACGGGCCGGGGCCGGGGCTGGGAGACTCTGGAGGCCAGCTGGGCTCGTCGGCGGCTGAGGGGTCGGGGAGCGGGTGTGGGGTAGGGGACCCTGCGGAGGAGGGGCGGGGGGAGACCGCGAAGGTGAAGGTGGAGGCCGACCAGTAGGCTGCAGACCAGGGACATGGGTTAGTTAAGGCGGAGGTACGAGGCCGACCCGGGGAGGGGGACGGGGTGGGGAAACGGAGGCAGGGGACAGAAGAGGGGAGATTGGGGGAGAGATGACAGCTGCAGGGATGGTTGTGAGCCGCTAGTGATGGAGAGCAGAGGGAGAGGGCCAGGCTCCAGACTCCCACACGCCCACACAGCACCTCTGCCAGGCCTAGGAGAGGACAGGTGCAGCTCTTGCAGCTCTGCGGGTGTGCGGCCAAAGGCAAGGCCCACGGGCTGGATGTCACTTCCCCGACTGTCTCTTGGTTGGCTTGTCCTTGTGCAAGACCCAGCCTGTCACGACAGAGCCTGGGCACTTCAGAGGAGGAGCCAGGATCGAATGGAAGGGGGGAATTGGGGTCCACCATAGTCTTCTGCTCTGGTCCTCCACGGGTGGACCAGGATGGAGTCTCCTGCCTACCTCACTGCATTGCACTGGACCTGGGATGCCTATCCACCCTCTGGCAGAAGACACTCACCAGGTTATCTGTGAAGAGACTCTGGGATCCCATCACCTCAAAGCCAGAGGGTCCCCAAGTCACCGCTGAGAGCACTTGAGCCTCAAGGATGTAAGCCTGACCATAGGATCTTGACTCCAACAGCGGCAACCCCCACCCCCATTGTGGTCCGTCCTTAACCCATCCACTCTTCTTCGGAGGCAACTGAGAACACATAAAGCAAGCAGCTACCTAGCATCCCCCTCCTAAAGCTTTAGACTCAGAGCCCAGGGTCCCCCACAAGCCTCAAGGTAGCCTCAGGTTTCTCTAATTTCCTCCACTCCCAGTTCGAAGCAAACAGCTTACTGCCTAGTCCCCGCCAATCCCAAGGGCGGGCTGGCTGATGGCAGCATGGTGGGCTGGCCTGGGTGTGGAGTGAAAGAGTCACTGTGGTGGGGGCGAGAGGAGGACTTGGGAGCTGGAGGTGTGACACCTTCAGTTCTGTTCCTATTAAAGGACCTTCTGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179922:ENST00000325351:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCCCAGAGTCGGAG
R:
CCCGTGTGCAAGCTGTAGTG
Band lengths:
358-2197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains