BtaALTD0024965-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000014478 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr21:55635560-55638281:-
Coord C1 exon
chr21:55638077-55638281
Coord A exon
NA
Coord C2 exon
chr21:55635560-55636255
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
GTTTGCTTCCCCGCAAGCAGGAT
3' ss Score
4.75
Exon sequences
Seq C1 exon
GTCACAGTCTCTGTGAAGGGGCAGGAAGTGCGCTTGGAGAAGATGACACCCCTGAAATCATCACAAGAGTTATTAAGTGTTCGGCAGGAGTCAGTGGAACCCCAGCCCAGGGGTGTACCCAAGAAAGAGAGGGCAAGAAGCCCAGACCTGGGACCACAGGAGCAGATGAACCCAAAGGAGAAGCTCAGACCTTTTCAAAGGAGCG
Seq A exon
NA
Seq C2 exon
GATTTCCATGTTCTAAATCCAGCATGGTCTCCAGGTTGGAGCAAGGAGAGCCATGGATCCCAGATCTGGGCTCCAAGGAGAAGGAACTCCCAAGAGGCAGTCACACAGAAGACAGACGAATGCCTGCTGATCTGTTACCATCCAGGAGAGAGAGAAGCAGCTGGGTGGACCAGGATCACTGGGGCTTTGAGGATGAGAAGGTGGCAGGTGTGCACTGGGGCCATGAAGAGACCAGAACTCTCCTCGCAATTCTCAGTCAGCCTGAGTTTTATGAGGCTCTCCGAAACTGTCATCGAAACAGCCAAGTGTACGGGGCTGTGGCGGAGCGGCTCCGGGAGTTTGGGTTCCTCCGGACCCTGGAGCAGTGCAGGACCAAGTTCAAAGGTCTCCAGAAGAACTATCGGAAAGTCAAGAGTGGCCACCCACCTGAGACCTGTCCCTTTTTTGAAGAGATGGAAGCCCTGATGAGTGCCCAGGTCATTGCCCTGCCCAGTAACGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014478-2-4,3-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.855 A=NA C2=0.579
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=36.9),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTGGAGAAGATGACACCC
R:
TCTCCTTGGAGCCCAGATCTG
Band lengths:
256-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development