BtaEX0041646 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014478 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr21:55635560-55639007:-
Coord C1 exon
chr21:55638690-55639007
Coord A exon
chr21:55638077-55638281
Coord C2 exon
chr21:55635560-55636255
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTCATGGGGGTTGTTTCCAGGTC
3' ss Score
6.94
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACCATGGCCAAACCCACCCTGAGAGGGAATGGCTCTAACTCTGAGGCCTTCCGACAGCGCTTCAGGAAATTTCATTATCAGGAGGTGGCTGGGCCCCGGGAGGCTTTCAGCCAACTCTGGGAACTCTGCTGTCGTTGGCTAAGGCCAGAGGTGCGCACCAAGGAGCAGATTGTAGAATTGTTGGTGCTAGAGCAGTTCCTGACCGTCTTACCTGGGGAGATCCAGAACTGGGTACAAAAGCAATGTCCAGAAAGTGGAGAGGAGGCAGTGACTCTGGTGGAAGACTTAGAAAGAGAGCCTGGAAGACCTGGACGTTCG
Seq A exon
GTCACAGTCTCTGTGAAGGGGCAGGAAGTGCGCTTGGAGAAGATGACACCCCTGAAATCATCACAAGAGTTATTAAGTGTTCGGCAGGAGTCAGTGGAACCCCAGCCCAGGGGTGTACCCAAGAAAGAGAGGGCAAGAAGCCCAGACCTGGGACCACAGGAGCAGATGAACCCAAAGGAGAAGCTCAGACCTTTTCAAAGGAGCG
Seq C2 exon
GATTTCCATGTTCTAAATCCAGCATGGTCTCCAGGTTGGAGCAAGGAGAGCCATGGATCCCAGATCTGGGCTCCAAGGAGAAGGAACTCCCAAGAGGCAGTCACACAGAAGACAGACGAATGCCTGCTGATCTGTTACCATCCAGGAGAGAGAGAAGCAGCTGGGTGGACCAGGATCACTGGGGCTTTGAGGATGAGAAGGTGGCAGGTGTGCACTGGGGCCATGAAGAGACCAGAACTCTCCTCGCAATTCTCAGTCAGCCTGAGTTTTATGAGGCTCTCCGAAACTGTCATCGAAACAGCCAAGTGTACGGGGCTGTGGCGGAGCGGCTCCGGGAGTTTGGGTTCCTCCGGACCCTGGAGCAGTGCAGGACCAAGTTCAAAGGTCTCCAGAAGAACTATCGGAAAGTCAAGAGTGGCCACCCACCTGAGACCTGTCCCTTTTTTGAAGAGATGGAAGCCCTGATGAGTGCCCAGGTCATTGCCCTGCCCAGTAACGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014478_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.855 C2=0.579
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=88.7)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF138371=Myb_DNA-bind_4=WD(100=36.9),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGTTCCTGACCGTCTT
R:
AGCTGCTTCTCTCTCTCCTGG
Band lengths:
292-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development