HsaEX0074576 @ hg19
Exon Skipping
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:26673]
Coordinates
chr15:43658308-43662246:-
Coord C1 exon
chr15:43661794-43662246
Coord A exon
chr15:43661121-43661325
Coord C2 exon
chr15:43658308-43659006
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTAACGGGGGTTGTTTCTAGGTC
3' ss Score
6.99
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGTGCCATCTTTCTCTGCCCTAGGAAGAAACACCTCTTACAGTCATCTGCAGGGGATTCTCCAAGGACATGGGAAGATAGATGTAAGCCCTGGAACCCAGACTCCTAAGCGAAGGGAAGCTGCATTCTGCTATTAATGATGGCCAAATCAGCTCTAAGAGAGAATGGCACTAACTCTGAGACCTTCCGACAGCGTTTCAGGAGATTCCATTACCAGGAGGTGGCTGGGCCGCGGGAGGCTTTCAGCCAACTCTGGGAACTTTGCTGTCGGTGGCTAAGGCCGGAGGTGCGCACCAAGGAGCAGATTGTAGAACTGTTGGTGCTAGAGCAGTTCCTGACCGTCTTACCTGGGGAGATCCAGAATTGGGTACAGGAACAATGTCCAGAAAATGGAGAGGAGGCAGTGACTCTCGTGGAAGATTTAGAAAGAGAGCCTGGAAGACCTAGATCTTCG
Seq A exon
GTCACAGTCTCTGTGAAGGGGCAGGAAGTGCGCTTGGAGAAGATGACACCCCCGAAATCATCACAAGAGTTATTAAGTGTTCGGCAGGAGTCAGTGGAACCCCAGCCCAGGGGTGTACCCAAGAAAGAGAGGGCAAGAAGCCCAGACCTGGGACCACAGGAGCAGATGAACCCAAAGGAGAAGCTCAAACCTTTTCAAAGGAGCG
Seq C2 exon
GATTGCCATTTCCTAAATCCGGTGTGGTCTCCAGGTTGGAGCAAGGAGAGCCATGGATCCCAGATCTGCTGGGCTCTAAGGAGAAAGAACTTCCAAGTGGCAGCCACATAGGAGACAGACGAGTGCATGCTGATCTGTTACCATCCAAGAAAGATAGAAGAAGCTGGGTGGAACAGGATCACTGGAGCTTTGAAGATGAGAAGGTGGCAGGTGTGCACTGGGGCTATGAAGAGACCAGAACGCTCCTCGCAATTCTCAGCCAGACTGAGTTTTATGAGGCTCTCAGAAACTGCCATAGGAACAGCCAAGTGTATGGGGCTGTGGCTGAGCGGCTCAGGGAATATGGCTTCCTCCGGACCCTGGAACAGTGTCGGACCAAGTTCAAAGGTCTCCAGAAGAGCTATCGGAAAGTCAAGAGCGGCCACCCACCTGAGACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCTCAGGTCATTGCCCTGCCCAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.316 A=1.000 C2=0.402
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=88.7)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF138371=Myb_DNA-bind_4=WD(100=36.8),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAGGAGGCAGTGACTC
R:
TCTCTTCATAGCCCCAGTGCA
Band lengths:
299-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)