RnoEX6018643 @ rn6
Exon Skipping
Gene
ENSRNOG00000012419 | Zscan29
Description
zinc finger SCAN domains 29 [Source:MGI Symbol;Acc:MGI:2139317]
Coordinates
chr3:113127091-113129992:-
Coord C1 exon
chr3:113129858-113129992
Coord A exon
chr3:113129236-113129436
Coord C2 exon
chr3:113127091-113127147
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATGGGGAGGGGTATGTCTAGGTC
3' ss Score
-3.04
5' ss Seq
AGGATCAGT
5' ss Score
-2.33
Exon sequences
Seq C1 exon
GTGCTAGAGCAATTCCTGACTGTGCTACCTGGGGAAATCCAGAACTGGGTACAGAAGCAATGTCCAGAAAATGGAGAGGAGGCGGTGACACTGGTGGAAGATTTAGAAAGAGAGCCTGGAAGACTTGGACATTCA
Seq A exon
GTCACAGTGTCTGTGAAGGGGCAGGAAATGCACTTGGAGAAGATGACACCCCTGAAATCCTCACTGGAGTTACTAGATGTTCTGCAGGAGTCAGTGGAACCCCAGTCCAAGGGTGTATCCAAGAGAGAGAGGGCAAGAAGCCCAGCCCTGAGACTACAGGAGCAGATGAACCCGGAGGAGAATCTCAAACCTTTTCAAAGG
Seq C2 exon
ACAGGATTCCCATTTCCTAAACCCAATGTGGTATCCAGGTTGAATCAAGGAGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012419-'5-5,'5-3,6-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.672 C2=0.360
Domain overlap (PFAM):
C1:
PF0202312=SCAN=FE(46.3=100)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGCAAGGATAGAGGGG
R:
GGCTCTCCTTGATTCAACCTGG
Band lengths:
148-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]