BtaEX0041637 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031873 | ZSCAN16
Description
Bos taurus zinc finger and SCAN domain containing 16 (ZSCAN16), mRNA. [Source:RefSeq mRNA;Acc:NM_001034411]
Coordinates
chr23:30305069-30311593:-
Coord C1 exon
chr23:30311124-30311593
Coord A exon
chr23:30309506-30309644
Coord C2 exon
chr23:30305069-30305719
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACATACTTCATTTTTCCCAGGTT
3' ss Score
7.47
5' ss Seq
ATGGTAACG
5' ss Score
6.05
Exon sequences
Seq C1 exon
GTTTTTCTCTGAGACAAGATTCTGAGAGATTCCCCTTGACTCAGTCCCAGATAGAGGATTAATCTCCTGAAAAACAGCCCAGAATGACCACATTTCTGGAACTTGAAGAACAAAAAAGACTTCTAATAGTTAAAGCAGAAGACCATTACAGGGGACAGGACTCCATCTCACAAAAGTCCAGTCCTCACAGAAGGGAACTCTTCAGGCAACACTTCAGGAAGCTCTGCTATCGGGATGCACCTGGACCCCGTGAAGCTCTTATCCAGCTCTGGGACCTTTGCCGCCAGTGGCTGAGGCCAGAATGCCACACAAAAGAGCAGATTTTAGACCTGCTGGTGCTTGAACAATTCCTGAGCATTCTCCCCAGGGACCTGCAAGCATGGGTGCAGGCACACCATCCAGAGACTGGAGAGGAGGCGGTGATTGTGCTGGAGGATCTGGAGAGAGAGCTTGATGAACCTCGAAAGCAG
Seq A exon
GTTCCAGGCAATTCAGAAAGACAGGACACACTTTTGGACAAGTTGGCCCCCTTGAGAAGGCCACATGAGTCATTGACTATCCAGCTTCATCCCAAGAAGACCTGTCAGGAGCAGAAATCTGGGGAGGCCCAAAGGAATG
Seq C2 exon
GTGATGAAACCAAGACTAACACTGAAGAGTTGTCCCAGAAGGAAGATAAATCCAAAGACATGGAATTCTTTGGGAAGATAAATGACAGACTTAACAAAGATATTCTTCAGTATCCTGAATCCAAAGATGCTTTTGAAAGTGAGGGCATTTTCAAGTGGCAACAGAGGAAAAGAAGATGCTATAAATGTGATGACTGTGGAAAAAGTTTCAGTCATAGCTCAGACCTTAGTAAACACAGGAGAACACACACTGGAGAAAAGCCCTATAAATGTGATGAATGTGGAAAATCTTTCATTCAACGCTCACATCTCATTGGACATCATAGAGTACACACTGGGGTGAAACCCTATAAATGTAAAGAATGTGGGAAAGATTTCAGTGGGCGCACAGGTCTCATTCAGCATCAGAGAATCCACACAGGTGAAAAACCCTACGAATGTGATGAGTGTGGGAGGCCCTTCCGTGTAAGTTCAGCCCTTATTAGACATCAAAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031873-'1-4,'1-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.851 C2=0.231
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.9)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF0013017=C1_1=WD(100=29.9),PF134651=zf-H2C2_2=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACACCATCCAGAGACTG
R:
TGCCACTTGAAAATGCCCTCA
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development