MmuEX0054060 @ mm9
Exon Skipping
Gene
ENSMUSG00000050619 | Zscan29
Description
zinc finger SCAN domains 29 [Source:MGI Symbol;Acc:MGI:2139317]
Coordinates
chr2:120991780-120996861:-
Coord C1 exon
chr2:120995546-120996861
Coord A exon
chr2:120994935-120995139
Coord C2 exon
chr2:120991780-120992454
Length
205 bp
Sequences
Splice sites
3' ss Seq
TAACGGGGGGTTATTTCTAGGTC
3' ss Score
5.15
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
TCTGACAAGGTTTTAAACATGTAAAGATACTCTCCTCAGATAGCGCCATTTCTCTCTACTCTAGGATAAAACTCCTTTTTACAGAGAGACTCATCTGCAGGTGTTTCTCCAAGGGCATGCAAAGATAGTGTAATAAGTCCTAGAACCCAGACAGTGAGGAGAGAAACGGCTTTCTGCTGTGAAAGATGGCCAAACCCACTCGGAGAGGAAATGGCACAAGCTCTGAAAGCTTACGACAGCGCTTCAGAAGATTCCATTACCAGGAGGTGGCTGGGCCCCGGGAGGCTTTCAGCCAACTATGGGAACTTTGCTGTCGGTGGCTAAGGCCGGAGGTGCGGACCAAGGAGCAGATTGTAGAATTGTTGGTGCTAGAGCAATTCCTGACTGTGCTACCTGTGGAGATCCAGAACTGGGTACAGAAGCAATGTCCAGAAAATGGAGAGGAGGCGGTGACACTGGTGGAAGATTTAGAAAGAGAGTCTGGAAGACCTGGACATTCG
Seq A exon
GTCACAGTCTCTGTGAAGGGGCAGGAAATGCACTCGGAGAAGATGACACCCCTGAAATCATCACAGGAGTTATTAAGTGTTCTGCAGGAGTCAGTGGAACCCCAGCCCAAGGGTGTATCCAAGAAAGAGAGGGCAAGAAGGCCAGCCCTGAGACTACAGGAGCAGATGAACCCAAAGGAGAATCTCAGACCTTTTCAAAGGAGCG
Seq C2 exon
GATTTCCATTTCCTAAACCCAATGTGGTGTCCAGGTTGGATCAAGGAGAGCCATGGATCTCAGATCTGCTTAGCTCCAAGGAGAAGGATGTCCCAAAAGGCAACACAGGAACCAGTCTATTACCATCCAAGAGAGAGAGAACCTGCTGGGTGGAACAGGGTCACTGGGTATTTGATGATGAGAAGGTGGTGGGTGTGCACTGGGGCTACAAAGAGACTAGAACACTCCTTGCAATTCTCAGTCAGACTGAATTTTACGAAGCGCTCCGAAACTGTCACAGGAACAGCCAAGTGTATGGGGCTGTAGCTGGGAGGCTTCGTGAATATGGTTTCCTCCGGACTCTGGAACAGTGTCGGACCAAGTTCAAAGGCCTTCAGAAGAGCTACAGGAAGGTCAAGAGTGGTCATCCACCCGACACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCCCAGGTCATTTCATTGCCCATTAATGGCCTGGAAGAGGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050619_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.241 A=0.768 C2=0.348
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=89.5)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF138371=Myb_DNA-bind_4=WD(100=38.1),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGCTGTCGGTGGCTAAG
R:
TCCTGTGTTGCCTTTTGGGAC
Band lengths:
306-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types