HsaEX0074576 @ hg38
Exon Skipping
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr15:43366110-43370048:-
Coord C1 exon
chr15:43369596-43370048
Coord A exon
chr15:43368923-43369127
Coord C2 exon
chr15:43366110-43366808
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTAACGGGGGTTGTTTCTAGGTC
3' ss Score
6.99
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGTGCCATCTTTCTCTGCCCTAGGAAGAAACACCTCTTACAGTCATCTGCAGGGGATTCTCCAAGGACATGGGAAGATAGATGTAAGCCCTGGAACCCAGACTCCTAAGCGAAGGGAAGCTGCATTCTGCTATTAATGATGGCCAAATCAGCTCTAAGAGAGAATGGCACTAACTCTGAGACCTTCCGACAGCGTTTCAGGAGATTCCATTACCAGGAGGTGGCTGGGCCGCGGGAGGCTTTCAGCCAACTCTGGGAACTTTGCTGTCGGTGGCTAAGGCCGGAGGTGCGCACCAAGGAGCAGATTGTAGAACTGTTGGTGCTAGAGCAGTTCCTGACCGTCTTACCTGGGGAGATCCAGAATTGGGTACAGGAACAATGTCCAGAAAATGGAGAGGAGGCAGTGACTCTCGTGGAAGATTTAGAAAGAGAGCCTGGAAGACCTAGATCTTCG
Seq A exon
GTCACAGTCTCTGTGAAGGGGCAGGAAGTGCGCTTGGAGAAGATGACACCCCCGAAATCATCACAAGAGTTATTAAGTGTTCGGCAGGAGTCAGTGGAACCCCAGCCCAGGGGTGTACCCAAGAAAGAGAGGGCAAGAAGCCCAGACCTGGGACCACAGGAGCAGATGAACCCAAAGGAGAAGCTCAAACCTTTTCAAAGGAGCG
Seq C2 exon
GATTGCCATTTCCTAAATCCGGTGTGGTCTCCAGGTTGGAGCAAGGAGAGCCATGGATCCCAGATCTGCTGGGCTCTAAGGAGAAAGAACTTCCAAGTGGCAGCCACATAGGAGACAGACGAGTGCATGCTGATCTGTTACCATCCAAGAAAGATAGAAGAAGCTGGGTGGAACAGGATCACTGGAGCTTTGAAGATGAGAAGGTGGCAGGTGTGCACTGGGGCTATGAAGAGACCAGAACGCTCCTCGCAATTCTCAGCCAGACTGAGTTTTATGAGGCTCTCAGAAACTGCCATAGGAACAGCCAAGTGTATGGGGCTGTGGCTGAGCGGCTCAGGGAATATGGCTTCCTCCGGACCCTGGAACAGTGTCGGACCAAGTTCAAAGGTCTCCAGAAGAGCTATCGGAAAGTCAAGAGCGGCCACCCACCTGAGACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCTCAGGTCATTGCCCTGCCCAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265_MULTIEX1-1/4=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.343 A=1.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=88.7)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF138371=Myb_DNA-bind_4=WD(100=36.8),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAGGAGGCAGTGACTC
R:
TCTCTTCATAGCCCCAGTGCA
Band lengths:
299-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development