HsaINT0188829 @ hg19
Intron Retention
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:26673]
Coordinates
chr15:43658308-43661325:-
Coord C1 exon
chr15:43661121-43661325
Coord A exon
chr15:43659007-43661120
Coord C2 exon
chr15:43658308-43659006
Length
2114 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
GTTTGTTTCCCTGCAAGCAGGAT
3' ss Score
5.6
Exon sequences
Seq C1 exon
GTCACAGTCTCTGTGAAGGGGCAGGAAGTGCGCTTGGAGAAGATGACACCCCCGAAATCATCACAAGAGTTATTAAGTGTTCGGCAGGAGTCAGTGGAACCCCAGCCCAGGGGTGTACCCAAGAAAGAGAGGGCAAGAAGCCCAGACCTGGGACCACAGGAGCAGATGAACCCAAAGGAGAAGCTCAAACCTTTTCAAAGGAGCG
Seq A exon
GTGAGGAGTAGATTCATATGGGAAGATAGACTGCCATTCCAAGTTGGGAAGTAGGGTTGGGAATAGTGAGTGGGAAAGGGATTTCAGGAGTAAGTGGAAATTGCAGAATATGTGGTTGTTGACATGTAGTTTAGCCTCTGGTATTCATATTACCTCTTGATAAGTCCACAAGAGAATGGCTCCCTAGTTTTTATCGGAACTTGGAATTATTTTATTTCCTCTTGGTAATGATGATAGTATAGGTCATTATTTTCTAGATAAAAATTCTTTTCTATACTTGAAGGCACATCTTCCTTTTGGTTGTTTTCCATCTTCAAATTAAACTATATTTGTTACCTTAAGCTTTCCCCCAGAAGATCCATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCTTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAAGATCCATTCTTTAAACCTAAGTTTCTGTTGCTCTCTATTGGAACCTTTAAGTTCTCCAAATATCATGTTAATTGTGGGGAACTAAATTATGTTTATTATTTTCCTGAAAGTCTGTTAGAAGCTAAGTAAGAATTTTACTTCAGAATCTTGCAATGTCTTGTATCAGTATAGCCCAACCTGTTATATTTTTTTGTTCACCTGGTAACTTCCAGGACTCTGATAGCTTTCCCCAATGCCTTTATACCTAGTTGATTATTCTTGTACTTGATTTTTGTAGAACTTGTTTTTCTTCTTTGTAGTCTATTGATCTCCATGTTGTATGCTTTTTTCTGTTACCATTTCACTTAAAATTTGTTGAGGTTGTTTTGAATTCTGATCTTATCATCCAAGACAATAGCCTTCTCAGCCAGTTTGGTAATGGTCTGTTTAGTCACCCAGATGAAATCCCTGAATCTCACACACAGACTTGCAGAGTTCATCAGTTTTTGAACACCTGTCAAGGTGCTCAACATCTTGCAGGGTACTCTGCAATAAGAAAATGTGCCTATCCTCAAAGAACTTAAAAACATGATTGAGAACACTATAGCTAACTCTTAAGTATGTGCCGAACTGAACTGAACTGAAACAGTGCCAGACAATGACTTGCCCAATTGTGTGAGTACCGTATGGGTTTGTCAGAGTGGGAGATGAGGGAGGGCTGACGGTAAGGCTTCTTGAGGGCACTGGCAAATACAGCCTCTTGAAGGATGGGCTAAAATTGGATAGGAGGGAATTAAAAGTAAAGGCACAGAGTGGTGAACAACAGTGTGCTGTGTTCTGAAGGGAAGAGTCTGACAGGAATGGGTATGGTAGGCACTAAGGTTAAGGTTCACCAGGGTAGCATGTGCACTGGCAAGCAAGAGCCTGCGGTTAGGTAGAACAGTGACTGCTGCAATTATCTGGGTGTGAGAGGATAAGTAGTCTGGACTTGGATGGTGGCAGTAGGAATAGAGAGGAAGGACTACTAAGGTGAACACCTTTAGAACCTGGTGACTGACTGTGAAGGAAACGGATAAGGTAAAGACAATCTTCTCTCGCTTCCCCCTTGAAATCACGCCGAGTTTAATTCTGTAGCCCCAAGTGAAGAACAATTATTCCCAGCAGTACTAGGACCTGCCTACAAATAGGAGAGCTTGGAATAGAATTATCTGCTCTGAACACACAACAGAATCCTTTCCTCTCTTGTCACCCTGCTCTGGAAAATAAAACATTTCTCATCTTTTGAGGTTTCCTGTATTTTCCCCACCTTTTTCAGCCCACTGAACTTTCTGAAAACATTTCCCTAGACACTTTGTTTATAATCCTCTTGGATGAAAAAGGCAGGACTGAATTTCAAGATTTTTGTGATAATCAGTCCAAACTATGACAACTTTTGTTTGTTTCCCTGCAAGCAG
Seq C2 exon
GATTGCCATTTCCTAAATCCGGTGTGGTCTCCAGGTTGGAGCAAGGAGAGCCATGGATCCCAGATCTGCTGGGCTCTAAGGAGAAAGAACTTCCAAGTGGCAGCCACATAGGAGACAGACGAGTGCATGCTGATCTGTTACCATCCAAGAAAGATAGAAGAAGCTGGGTGGAACAGGATCACTGGAGCTTTGAAGATGAGAAGGTGGCAGGTGTGCACTGGGGCTATGAAGAGACCAGAACGCTCCTCGCAATTCTCAGCCAGACTGAGTTTTATGAGGCTCTCAGAAACTGCCATAGGAACAGCCAAGTGTATGGGGCTGTGGCTGAGCGGCTCAGGGAATATGGCTTCCTCCGGACCCTGGAACAGTGTCGGACCAAGTTCAAAGGTCTCCAGAAGAGCTATCGGAAAGTCAAGAGCGGCCACCCACCTGAGACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCTCAGGTCATTGCCCTGCCCAGTAATGGCCTGGAAGCAGCAGCCTCTCACTCTGGCCTGGTAGGCAGCGATGCTGAGACTGAAGAGCCAGGGCAGAGGGGCTGGCAGCATGAGGAGGGAGCAGAAGAGGCTGTGGCTCAGGAGTCTGACAGTGATGACATGGATCTAGAGGCGACCCCCCAGGACCCCAACTCAGCTGCACCTGTTGTGTTCAGAAGCCCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265-ZSCAN29:NM_152455:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.402
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=36.8),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)