RnoINT0169494 @ rn6
Intron Retention
Gene
ENSRNOG00000012419 | Zscan29
Description
zinc finger SCAN domains 29 [Source:MGI Symbol;Acc:MGI:2139317]
Coordinates
chr3:113127091-113129436:-
Coord C1 exon
chr3:113129236-113129436
Coord A exon
chr3:113127148-113129235
Coord C2 exon
chr3:113127091-113127147
Length
2088 bp
Sequences
Splice sites
5' ss Seq
AGGATCAGT
5' ss Score
-2.33
3' ss Seq
TTTGGTTTGCTTCCCTGCAAACA
3' ss Score
1.61
Exon sequences
Seq C1 exon
GTCACAGTGTCTGTGAAGGGGCAGGAAATGCACTTGGAGAAGATGACACCCCTGAAATCCTCACTGGAGTTACTAGATGTTCTGCAGGAGTCAGTGGAACCCCAGTCCAAGGGTGTATCCAAGAGAGAGAGGGCAAGAAGCCCAGCCCTGAGACTACAGGAGCAGATGAACCCGGAGGAGAATCTCAAACCTTTTCAAAGG
Seq A exon
ATCAGTGAGAAGTAGCTGTGTATGGGAGATAGAGCCCTCTAAGTTGGAAGTAGGGTTGGGAGTAATGAGTGGGAAAGGGATTTCAGAGATAGTGGCACCTGCCAAATGTGACATTTTGGAAAGGCAGCTAGTTCAACCCTCTGGTAGAGTATTATATTTCTTCCTTTGATAGGTCTGCTTAGTTTTTATTACAGTCAGAATACTTTTATTTCTGGTGATTGATAGATGCTTATTTTCAAGACACACTCTTTTCTATGCTGAAGACACCTTTGTTCTAGTTTTTCTTTCTGTTATCTCCATTCTTTAGATCTATGTTCTTACTCTTTACATTGGAACCTTGAAGTTCTCTAAATACTTGATCATGGAGAAGGAAATTATATCTGTATTATTCCTGTGAGTGGTGTAAAGATGTAAGAATTTTACTTCAAAATGTTGCAACCCCCTGCAGTACAGCCCAGCATATGACTACAGAATGATCTTTGTCCACCTGGAAACTCCATGACTCTTAGCTTTCCTCAGTGCCTTTGGACCCAGTCATTTACTCATTTTGTAGAACTTGGTTTTCTTTGTGCTTTATTGAACTATATTTTATTATTATTTAAAACATATTGAGGGTGTTTTGAATTCTGATCTTATCATGCAATATGACCAGTAATAGCATTCTTGGTTAGTTTAATAATGGTCTTTAGTCATCCATTGGAAGTACTCAACCTTGATATAAGGACCTGCAGAATCAATCTTACTGGTGTGCTGCAGGGTGCATACACTGTGGTAAGAAAAGGTATCTGTCGGCCATCAAGCTGACTCAGCTGATAATGGTACTTTCTGCATAAGCCTGATGACCTGAGTAGAAGCAAGTCCATGAAGTTGTCCTTAACCTCCACATGCACTATGGAGCATGCACTCCCACATACATCATGCTTGCACAGTTTTGTTAAAGTACCTCTTATCAAAAAGCTTACAATATAATTTAAGAGCACCCAGTGAATTATGAATATGCACTGAACTTAACTATCTGAAAAAAGTGTTAAGGACTTGCTTGGTTTTAGGGGTTTGGCAGTGTGGCCATGAGATGAGGTTCTAGGGAATACCTTCCAAAGGCATGGGCAAGGAGGCTTCCCCAAGGATGGTTGAGTGCCAACAGGAGGAAGGGAAGAACAAAAAGTGAATAAAAGTGTACAGTGTGGACAGGAGTGGACAGAATATGCTAGAAACCAAGGTTAAGGCTCAACAGGAAGGTAGCATGTGAGCTGAGGAGCAATTAGCATAGTGACTGCTGTGGTGCTAGTTATGGGAAGATTAAGAGTCTGGACATGAGTGGAAAGGAGGATACATGCTGAGGGAAACATTTAGAATTTGGTGACTTAGTGTAAAGGACCTTCCCTCCTCCCAACCTCTTGAAAGCACTTAATTTAATTCTCAGGACTGAAGTAAAAAGCAAACAAACCAACAACTAGAGGAGACAGGAGTGACTGACTGAGAAGGGCTAGCATCTGCAAACAAGTATAGAGGCTAGAGAGCGAGCGACCTGGAAGGGAACTACCTGCTCAAAGCACACCACAGAACACTTTCTTCTCTCATTCTGCTTTAGAAGACAAATCAAGTTCTTTTTCATCCAGTGAGGATTCCAGAATATTCTATTCTTCAACCCATTGAACTTCTGAAAACATTTCTTTTATAATTTTTTTTAAGGCAGGGTTTCTCTCTGTACCCTTCACTCTCTTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTGAGGGGTCCACCTGCCTCTGCCTCCTGAGTGCTGGAATTAAAGGTGTGCAGCACCACCTTTTCCCTTTCTAATCTTTTAGATAGAGGCTGGGAATATAGCTCAATTTGTAGAATGCAGTATATGCCAAGCCTCATTTGATCCCCAGTACCAGATAAAACTCTGCTAGGTGTTACACACTTGTAATCCCACTACGTAGCCTCATTCCAACTAGTCTGGGCTATATGAGACCCTAATTCAAACAAAAAAGATAAAATCTTGAGTGAAAGAGGAAGGCTTTTTGTTTGTATGATCAGTACAAACTGTGATACTTTGGTTTGCTTCCCTGCAA
Seq C2 exon
ACAGGATTCCCATTTCCTAAACCCAATGTGGTATCCAGGTTGAATCAAGGAGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012419:ENSRNOT00000035889:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=NA C2=0.360
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]