BtaINT0166414 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014478 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr21:55638077-55639007:-
Coord C1 exon
chr21:55638690-55639007
Coord A exon
chr21:55638282-55638689
Coord C2 exon
chr21:55638077-55638281
Length
408 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TTCATGGGGGTTGTTTCCAGGTC
3' ss Score
6.94
Exon sequences
Seq C1 exon
ACCATGGCCAAACCCACCCTGAGAGGGAATGGCTCTAACTCTGAGGCCTTCCGACAGCGCTTCAGGAAATTTCATTATCAGGAGGTGGCTGGGCCCCGGGAGGCTTTCAGCCAACTCTGGGAACTCTGCTGTCGTTGGCTAAGGCCAGAGGTGCGCACCAAGGAGCAGATTGTAGAATTGTTGGTGCTAGAGCAGTTCCTGACCGTCTTACCTGGGGAGATCCAGAACTGGGTACAAAAGCAATGTCCAGAAAGTGGAGAGGAGGCAGTGACTCTGGTGGAAGACTTAGAAAGAGAGCCTGGAAGACCTGGACGTTCG
Seq A exon
GTGAGCAGGGAGGGGGAATTCAGAAGTATGTGACTGGGAAGGGGCAGGATAAAAGGCCAAATTAAGGCACAGTCTCCATTAGATGCTCCTACTTCTGGTCCTTCAAAAGGTAACTTTTTCAGACAGGTTATTGGGAGATGCCACCTGAATGTAACTTTTCGACATAATGAGAGGGGAATCCTTTTTTAGTGTGGAATTGGGTTTACTATTTTGTTCTGGAGTTCCAGCTGCTCTAAGCTAACAGTAATGGAGTAAGAAAGACCATTGTTCTATTAACCAACCCCCTACCACCACCCCAACCCTAGCCATGTCCCAAAGGGATGATCTCTTTTGGGATATTAACTAGACTCCTCTGGGAATACCCCTCATTATGACCTTGCAGTGACAATTCATGGGGGTTGTTTCCAG
Seq C2 exon
GTCACAGTCTCTGTGAAGGGGCAGGAAGTGCGCTTGGAGAAGATGACACCCCTGAAATCATCACAAGAGTTATTAAGTGTTCGGCAGGAGTCAGTGGAACCCCAGCCCAGGGGTGTACCCAAGAAAGAGAGGGCAAGAAGCCCAGACCTGGGACCACAGGAGCAGATGAACCCAAAGGAGAAGCTCAGACCTTTTCAAAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014478:ENSBTAT00000019251:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=NA C2=0.855
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=88.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCAAGGAGCAGATTGTA
R:
GGTCTGAGCTTCTCCTTTGGG
Band lengths:
356-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]