HsaINT0188828 @ hg38
Intron Retention
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr15:43368923-43370048:-
Coord C1 exon
chr15:43369596-43370048
Coord A exon
chr15:43369128-43369595
Coord C2 exon
chr15:43368923-43369127
Length
468 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TTAACGGGGGTTGTTTCTAGGTC
3' ss Score
6.99
Exon sequences
Seq C1 exon
AGTGCCATCTTTCTCTGCCCTAGGAAGAAACACCTCTTACAGTCATCTGCAGGGGATTCTCCAAGGACATGGGAAGATAGATGTAAGCCCTGGAACCCAGACTCCTAAGCGAAGGGAAGCTGCATTCTGCTATTAATGATGGCCAAATCAGCTCTAAGAGAGAATGGCACTAACTCTGAGACCTTCCGACAGCGTTTCAGGAGATTCCATTACCAGGAGGTGGCTGGGCCGCGGGAGGCTTTCAGCCAACTCTGGGAACTTTGCTGTCGGTGGCTAAGGCCGGAGGTGCGCACCAAGGAGCAGATTGTAGAACTGTTGGTGCTAGAGCAGTTCCTGACCGTCTTACCTGGGGAGATCCAGAATTGGGTACAGGAACAATGTCCAGAAAATGGAGAGGAGGCAGTGACTCTCGTGGAAGATTTAGAAAGAGAGCCTGGAAGACCTAGATCTTCG
Seq A exon
GTGAGAAGGGAGGGGGAATTCAAATTCAAAAGTGTGATACTGGGTGGAGGGCTAAATTAAGATATAGACAGGCTTAAAGAGGGACACAGTCTCCCTTGGTGAGGCTTATACTTCTGGTCTGGTATAGGTAACTTTTTCAGATAGTGCTTGTCTGGAGATGCTTCCTGGGTGTACCTTCACCTACCCTGTCATAATGAGTTTTTCCTATAGTTTCTTAATAGGGAAGAAAGGGGATTTTTTTTTTTCAGCCTGAAGGTGGGTTTACTATTTTGATCGTTTCCTTCTGGAGTTTCAACTGCTTTAAGCTAATGGCAATGGAATAAGACCCTTGTTCGCGTTAACCTCCCTCACCCCTACAACCCTGGCCATGGCTCTGAAAGATGATCTCTTTTGGGGTATTAAATACTCTCCTCTGGGAATGCCCCTCATTATGATCTTGCAGTGACAATTAACGGGGGTTGTTTCTAG
Seq C2 exon
GTCACAGTCTCTGTGAAGGGGCAGGAAGTGCGCTTGGAGAAGATGACACCCCCGAAATCATCACAAGAGTTATTAAGTGTTCGGCAGGAGTCAGTGGAACCCCAGCCCAGGGGTGTACCCAAGAAAGAGAGGGCAAGAAGCCCAGACCTGGGACCACAGGAGCAGATGAACCCAAAGGAGAAGCTCAAACCTTTTCAAAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265:ENST00000396976:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=88.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACTCTGGGAACTTTGCT
R:
TGCCCTCTCTTTCTTGGGTACA
Band lengths:
344-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains