BtaEX0000134 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr22:16415882-16437262:+
Coord C1 exon
chr22:16415882-16416304
Coord A exon
chr22:16436810-16436974
Coord C2 exon
chr22:16437103-16437262
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCCTGACTCCTTTTTCTAGGTG
3' ss Score
10.43
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
ATGGCTACCCAAGGCAGGGGAACTTCAGGCCTCTTCCCCAGGGGTGCTGTTCTCCAGAGACAGGAGGGCTGCCTGACCGTGAAACAGGAACCAGGGAGCCCGACCTGGGGGCATGGCTGCAGTCTCCAAAAGAATCACCCTCCTGTCTGTGAAATTTTCCGGCTCCACTTTAGGCAGTTATGTTATCATGAGATGTCTGGGCCACAGGAGGCACTGAGCCGGCTCCGGGAGCTGTGCCGCTGGTGGTTGATGCCAGAGGTGCACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAATTCCTGAGCATCCTGCCTGGGGAACTCCGGACCTGGGTGCAGATGCATCACCCTGAGAGTGGTGAGGAAGCTGTGGCTGTGGTGGAGGACTTCCAGAGATACGTCAGTGGGCCAGGAGAG
Seq A exon
GTGGTTCTTCACGAGCACGTGTGTGTCTGAAGCACTAGCCCAGAGTGGAAATAGTTCTGTAATCTGGTCTTGAAGCTCCTGCCAAGATGGGCAACAGAGGAATGGCAAGTAGGACTGCAAGCTGTAGATCCTGCTTGGACAGTATTCTCCCACTTGGCTAACCTG
Seq C2 exon
GTTTCCACTCCAGGGCAGGAACAGGAGATACATTCTGAAGAGAAGACAGCCTTGGGTGCAACACATGAATCTCCTTCTACCTCACCCCACAGTGAGGGTTCAGCCCCTGGAGCCCACCTGGAGCCTCCTCGTGATCCTGGGGCACACCACCACCTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003622_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.9=66.0)
A:
PF0202312=SCAN=PD(1.0=10.0)
C2:
PF0202312=SCAN=PD(1.0=1.9)
Main Inclusion Isoform:
ENSBTAT00000023585fB25
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACACCAAGGAACAGATC
R:
ACTGTGGGGTGAGGTAGAAGG
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development