BtaEX0000162 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKN3]
Coordinates
chr13:11182471-11183816:+
Coord C1 exon
chr13:11182471-11182516
Coord A exon
chr13:11182986-11183103
Coord C2 exon
chr13:11183639-11183816
Length
118 bp
Sequences
Splice sites
3' ss Seq
GGTTTATCTTTTGCTCTCAGGAA
3' ss Score
8.04
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACACGGCGGAAGTTGGAAAAGAGTATAACTAGAGAACTAGAAGAAG
Seq A exon
GAAAGACTCCAAACACCCACATCAATTTGGGTCCTGCCAAAGTAGTCGGCCTTATCTCCTTACCACCCTCCTCTGCCCCTCAACTCTGCATCTAACCAGACTGTGTAGGAGCCCACAG
Seq C2 exon
GTGCTGCTGAATTTGAATCTGAATTCTCTAGATTGTCCTCTCTATTATCTACAGGTGGATCAAATCTGTATCGGGACTAACCTGTGAAAACATCAAAATAATATATACAGATTTTGAAGAAAAAAATATATGATTTGAAACTCAATAGTAAAAATTTCCCTACTGGATTCTTTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004354_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.367 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF120013=DUF3496=PD(4.4=26.7)
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000011189fB33
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGCGGAAGTTGGAAAAG
R:
TGTTTTCACAGGTTAGTCCCGA
Band lengths:
138-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development