BtaINT0000790 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKN3]
Coordinates
chr13:11182471-11183816:+
Coord C1 exon
chr13:11182471-11182516
Coord A exon
chr13:11182517-11183638
Coord C2 exon
chr13:11183639-11183816
Length
1122 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ATAATTCTCTCTCTTTCCAGGTG
3' ss Score
12.87
Exon sequences
Seq C1 exon
ACACGGCGGAAGTTGGAAAAGAGTATAACTAGAGAACTAGAAGAAG
Seq A exon
GTATGTTGCCAAAACGTATGAATTAAATTTAGACATTGATTTCTGAAATACTGTAAAGAGTAAGTGGCGTCTCTTTTCACTGTTTGTATAACAAATGCTATGTTGTATACTTTTTCTTATACATAGCTAATGGAAAATGTGAACACATGAGCAATCATAGTGAAAAATATCCTTATTCCTTATTTATTTATTATGTTCTATAGCTTTAAAAAAATCTGAAAAGGTCTATGTATTTCTTTTCCTTTCTACGTATATCCTTCCTCTACTTGTGCCATCCCTGTGGAACTGTCAGCCTCCACGCTGACACTATTCTCAGAAAACATGGAGTTCATCAATGTCTCAAGTGTCTGGTAGTGGTTAAGGCTAGGAAACCCAGACTCGAGCAATCACGTTTGTGTAGCTGTCACTGGGGGTGACTTTAAAATTTCCCTGTCATTCCCTTTCTCACTGGTTTATCTTTTGCTCTCAGGAAAGACTCCAAACACCCACATCAATTTGGGTCCTGCCAAAGTAGTCGGCCTTATCTCCTTACCACCCTCCTCTGCCCCTCAACTCTGCATCTAACCAGACTGTGTAGGAGCCCACAGGTGCGCTTCCTCACCTCCGGTCTTGTACGTGCTTCTCCCCTCCATCTCCTGTACTTTTTCCTGTCCTTCAGGTAGCTACTTCCATAGCACCTCCACCAAAAAGCTGGCAGTCCTGACACAAAGCTGGCTGTCCCTTCTGCGTGTTCCTTGTGCCATCTTTTGTATCTGTCTCAGTATTTATGACTCTGTATGGAAGTTGCCTGTTCATCTATTTTTCCACTTTATAGCGTATCGTTTTCAGGGTGCACTGGGTCACCTTCATCTTTTACTTCCAGTGCTTGTCACAGCACCCTTGTGCATAGTTACTGAGTAAATGAATGAAGAATGAGAAAACCAGAAGCTCTGATACTCAGCCACACATTCAACCATGGGCAGATAATGCAGTTATCTTGTATTTTGTGTCATGTCATATATAGATATGTTTCATTCTTCAGAACACTAGGAAAGGTCTCAGGTGATTTTTTTGTTTCGTTTTAGCTAATACTTTGTGAATTCAAGTATTTTAGATAAAGAATATAATTCTCTCTCTTTCCAG
Seq C2 exon
GTGCTGCTGAATTTGAATCTGAATTCTCTAGATTGTCCTCTCTATTATCTACAGGTGGATCAAATCTGTATCGGGACTAACCTGTGAAAACATCAAAATAATATATACAGATTTTGAAGAAAAAAATATATGATTTGAAACTCAATAGTAAAAATTTCCCTACTGGATTCTTTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004354:ENSBTAT00000011189:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000011189fB33
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development