HsaINT0029092 @ hg19
Intron Retention
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:29072]
Coordinates
chr17:16675914-16678311:+
Coord C1 exon
chr17:16675914-16676023
Coord A exon
chr17:16676024-16676810
Coord C2 exon
chr17:16676811-16678311
Length
787 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
ATTCTTGCTTTTTTTTTCAGCTG
3' ss Score
9.57
Exon sequences
Seq C1 exon
GATCCAGCCAAACTGGACTGCACAGAATTCCACAGTGCTCGTCCTTCTCCTCCAGCTCTTTGCACTTGCTTCTTTGCTCTATCTGCCAACCTTTTTTTCTCATCCTTCAG
Seq A exon
GTATCCACTAACCATGCCTCCACCGAAAAGCCTACAGTATCGAGACAAAACTGGGATAGGTGTCCCTCTTGCATTCCAATAGTGCCCTGTTTTATACCTGTCAGGGTATCTATGACTTGGTATGGAAATTGCCTATTTGTCTGCTTTTTCAGGTTATAGCATATGATTGCTGAGGGGTGGACTGTATCATCTTCATCTTGTAACTCCAGGGCATAGTCTAGTACCTTAGCATGTGGTTGTTGAATAAATGAATGAAGAATGAGAAAACCAGAAGCTGTGATACACAACCACAATGATCATTAATTTAGTGTGCAACTGTGGGCAGATTCTTATCTAATAATAAGTTAGCATTGTAGTCATACATACTTTTCATTCTTGTTAACACTGAAAAAGCTCTCAACTCTTTTTTACTGATTTGCACTTAGTTAACTATGAAATATATAGAATATAATTCTTTGGCCAGGCATGTTGGCTCACGTTTGTAGTCCCAGCACTTTGGGAGCCTGAGGCAGGCAGATCACTGGAGCCCAGGAGTTTGAGAGCAGCCTGTGCCAACATGACGAAACCCTGCCCCTATAAAAAATACAAAAGCTTGCCAGGCACAGTGGCTCATGCCTGCAGTTCCAAGTACTTGGGGCTGAGGCAGGAGAATTGCTTAAGCCTGGGAGGACAAGACTGCAGTGACCTGTGATCACACCATGGCACTCCAGCATAGGTGAAAGAGTGAGACCCTATCTTAAAATAATAACAATAATAATAATAATATAATTCTTGCTTTTTTTTTCAG
Seq C2 exon
CTGCTACTAAATATGAACCTGGATCCTATATAGCTTCTCCTCTAGGATTTACACACAAGGAAAATCTGAATCAAGATCCAGTTTTGGAAGTAACAAAAGAATATGCACAGATTTTAAGAAGAAAATACATACTCTGAAAGATAAGGCAATTTTATTTGGGCTATTCACATGATATTTTGTTTCCCATTAAATATATGATGTGAACATTTTTACTAAAGGGAAATATTCTATATTATACATGTCTGATGAAAATTTATATAGTATTTTAAATAATGTTTCTTGGCCTCTTCAGCTAACTTTTAAGTGGATTTTGCAAATGAAAACCAGTATTACTGAGTTTTACATACTCGAACTGCCCAAATGTTTGCTGTTTAAACAGCCAAATAATCAAGTTGCCATTAGTAATTTAGTGGAGCCAATTGATGGCTTGTTTGTATTTTATAATTTTATCTTTATACATAGTGATAGATTTAAGTTTAGATAGACATCATTTTGGTATACTGGTACTGTGGTCATTGTCAATGTTTGGATGTATTACGATTGTTATAGTGCAATCAAACTTAGATAATTTTAATTTTAAGCACTGATTTATTTAGATCTTTCCTTGTGGAAAAATAAGGTTTGCCTAAGGCTTTTTGCTTTTTTATTTATTGTTTCATTTCTTTATTAGATTAACTTTTGGGAAACAGTCTTAAAATTGGAGAAAATTTCCACATTTTAGGAAAAACAGCTTTCCCCCTGTGGGCCATTTGAGAGTAAATTGCTGACATTATGCCATCACATCTGGTATGTGGGTATTCCCACAAGTCAGGACATTTTATATAACTACTTCATAATCGGAAAGTTAACATCAATACACTTGATCATTTAATTCTCAGTTTCTTTTCAAGTTTTCTTAATTGTCTATAATGTTCTTTGTAGCAGAAGGATCCCATTCAGGTCCATGAATTTCATTTAGTTGTCATGACTCTTTCAGTCTGGAACAGTTCCTCAGTTTTTCTTTGACCTTTATGACCTTAAATCTTTTGAAGAGTAAAGTCCAATAATACAGAATGTCCCTCCATTGGATTTCTCTGAACTTTTTTTATGATAAGATTTAGATGATAATTTTTTTTTTGGCAAGAGTATCACAGAAGTTATCCCATGATCTTCTCACTGCATTCTATCAGGTGACCTGCAATTATTATTATTTTTTATTTTCATCTTTTAAGTTCAGGGGTACATGTGCAGGATGTGCAGGATGTCCAGGTTTGTTACATAGGTAAATATGTGCCATGGTGGTTTGCTGCACAGATCATCCCATCACCTAGGTATTAATAATAGCCCAGCATCCATTAGCTGTTCTTCACGATGCTCTCCCTTCTTTCACCCGCCACCATCCCACATGCCCCTGTGTGTGTTGTTCCCCGCCATGTGTCCATGTGTTCTCATTATTCAGCTCCCACTTGTAAGTGAGAGCATGCAGTATTTCATTTTCTATTTCTGCGTTGGTTTGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160-CCDC144A:NM_014695:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCTCTTTGCACTTGCT
R:
AGCTGAAGAGGCCAAGAAACA
Band lengths:
355-1142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)