GgaINT0109023 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24109034-24111623:+
Coord C1 exon
chr1:24109034-24109079
Coord A exon
chr1:24109080-24111474
Coord C2 exon
chr1:24111475-24111623
Length
2395 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTTGTTTCTTTTCTCTCCAGCCA
3' ss Score
9.27
Exon sequences
Seq C1 exon
ATACGGAAGGAACTGGATGAAAAAATCACTAAAGAACTTGAACAAG
Seq A exon
GTAATGTGCTACTCTGATATCAGTGTTTTTAAGGAAGATGATGACTGTTCTTAACTTCTATGTAATTATTTTCAAAAGTTGTTAAGATCCTATTTGAAGCATGGTGTTTTTTTAATCTATCTAATTTAGAGTTTTAATGGAAAACTTCCTGCTTACCAATATACTGTTCAGAATGTTCTGCAGTTACTTTTGAGAAAAAGCACGGAGAACAAACCATCTCCCCCACACAGATACATTTGGCCTAAGCTGAAGTCACCTTTCATCCTCAGGCACAAACATCAAATGTAAAAAAAGCCCTGAAATAAGATTTTTATAGACTCCGGTCACCACATCTCTTTCTGCATACATTCACTGCATTCAACACTTCAAGAATACCATATACATTTTCTGGTGTTCTTGATTCTTGCTATCTCTTTTTCATTGCTTTTGTTTGTACCTCACATGTTGTTGTTGTAGTCATCTTTGGATAAACAAGAATTAGTAGAAAAGATAGACTTTCTTTAGGTAAAAATCATTCAGTAATATTCAGGCAAACACGGTGTGAATTGATTGCTTTTAATATACAGTGTAAAGCATGTTCTGTAAGACAAGGCCAGGTCTTCAGAGAGGAATTCCACCTGTTTCATAATTATCATTCTGCCAGAGTCACTGCTGCTGTGCCTAGAGCTATTTTGAAGCAGGGAGCCCTTGAGAGTCCAGCTGTTGCTTCACAGCTCTTCCAATTTGCCTGAATAGACAGAAACCCATTGCCCTGTATCCATTTGCATTTTCAAACATAATTACATGTCTAGGAGGAGCTGTAGTATTTGTTTGGTCGGGGGATCTTGTCTGAAAAAGGTTGATGGATGGAAGTACAGAAAATCTTTTTCTGCTTTCATTGAAGACGTATTCCCTTGGAGGAAAGAGGGTTTAGCCAGGGAAAGTTAAGAAGATGTCCTACAGATGGCTGTGTTAGGCTGAGCGACTTGTGGCTGGACTATAGTACAAAGGTGTTTGTATTTTCCAAATCCTGTCACTTTTGATCTGATCACAATGAATGTGGAAGCTGTTTTTTAGGAGTAGTGTTCTCAGGTCAGCATGGGGCTAAATTTACCACTGGTTTGAGCAAGTGTTGTTTGTGGATTCCCTGAAGAGGAGAGTTGTGGTCAATGGCTCAGTGTCCAAGTGGTGACCAGTGGCAAGTGGTGTTCCTCAGGGATCTGTGCTGGGATTGGTGCTATTTAACATCTTTGTAAGCGATATGGACAGTGGGATCAAGTGCATCCCATCAAGTTTGCAGATAACACCAAGCTGAGTGGTGCAGTTGACACGCTAGAAGGAAGGGATGCTATCCAGAGGGACCTGGACAGGCTTGAGAGGTGGGCATTGCCAACTTCATGAAGTTCAGTAAGGCCAAGTGCAAGGTTCTACAGCTGGGTCAGGGCAGTCCCAAGCACCGATTCAGGTTGGGTGGGCAAAGGCTTGAGAGCAGCCCTGAGGAAAAGGATTTACAGCTGTCAGTTGATGAAAAACTCAACATGAACCAGCAGTTTGCGCTTTCAGCCCAGAAGGCCAACCATATCCTGGGTCACATCAAGAGAAGTGTGACCAGCAGGTCAAGGGAGGTGATTCTGCCCCTCTACTCTGCTCTCATGAGACCCCACCTGGAGTATTGCATCCAGTTCTGGGGCCCCCAATGCAAGGACATGGAGCTGTTGGAGTGGGTCCAGAGAAGGGCTACGAAGATGATCAGAGGGCTGGAGCACCTCCTCTGTGGGGTCAGGCGGGAGAGCTGGGGCTCTTCAGTCTGGAGAAGAGGAGGCTCAGGGGGGCCTTTTAGTGGCCTTCCAGTACCTGCAGGGGCCTACAGGAAAGCTGGGGAGGTACTTTTTATGATGGCATGTAGTGACAGCATGAGGGGAAATGTCTTTAAACTGGAAGAGGGTAGATTTAGGCAAGATACTAGGAAGAAATTCTTTACTTCTTAATGTAAGGGTGGTGAGACACTGGAACAGGTTGCCTAGAGAGGTTGTGCGTGCCCCCACCTTGCAGGCATTCAGGGCCAGGCTAGATGGGGCTTTGAGCTGCCTGGTCTAGAGGGAGGTGTCCCTGCATATAGCAGGGGGAGTGGAACTAGACAATCTTAAAAGGTCCCTTCCAGCCCAAACCATTCTATGATTCTATGACCTCTGGAATTTCTTTGTCTAGATTTAGAAGTTGTGTTGACTGATAATTGAATTTCAAAAAATGTTTCTTCCTTTGTGCCTATCCTTTTGATTTTTGTTTTCCTTGGAAGTTTTTTAAATCTGTCTCCAGAGTGTAGCCTGTTCAGTTACCAGTAATGTTTTTACAGTGACTTATTTGACTCAATCTACTGTAAAAGTAGTATCATGAATCTTGTTTCTTTTCTCTCCAG
Seq C2 exon
CCACTGCTGAACTTGAAACTGGATCTGCTGGAGCTTCTCCAATGGTATCTACTGATGGATCTTCAAGAAATCTCAATGTTGACCAGGATCCCCTTTGCAGAGCAATACAGGAGTACCGTGATGTTTTAACCAAAAATTATCTGATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]