HsaINT0008664 @ hg38
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27004298-27006962:-
Coord C1 exon
chr10:27006917-27006962
Coord A exon
chr10:27005724-27006916
Coord C2 exon
chr10:27004298-27005723
Length
1193 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTCTTTCTTTTTCATTCTAGCTG
3' ss Score
10.17
Exon sequences
Seq C1 exon
ATGCAGCAGGAGTTGGAAAAAAATATAACTAGAGAACTCAAAGAAG
Seq A exon
GTATGTTGCCAAACTTCATGAATTAAATTTAGATTAATTAATTGATTTCTGAAATAAATTGTAAATCGTGAGTGGGATCCCTTTCCATTGTTTGGCTAATAGATACTACATTAAATGTTCTTTCTTACACACATCTAATGAAAGATGTGAAAACATGAATATTCATAGTGAAGAGTATACTTACTTTGTCTCATTAATTCATCATGTTCCATAGCTTTAAAAAAACTCAAGAAATCTTTGCACCTCTTTTTTTTCCGGCTCTACACTTTCTTCACTTCTGCCATCCCCATAGAACTGTAGCCAGCATGCAGAAATTATTCTTAGAAAACAAAGACATCATCAACTTCTCAAGGTTATGGTGGTGATTTAAGGCCCAAAGACCCCAGACTCACTAGTAATATCTAGTCTGGAATTACAGTTCATAAGCAGTTGCTTGACAGGTGACATTTGAAATCTCCAGTCATTTACTTTGTCATTGGTTTCCCTTTGCCCTCAGGAGAAGTTCCAAATTCCTTAGCATGGAATAAAAATACCCACATCAATGTGGTCCTTGTGACGTTATTCAACCTTATTTCTCACCCCTTGCTGTTCTTCGGGCCCCTTTGCTCTGGCATCCAGCCACCCTAGACCACGTGGAATTCCACAGGGAGCTTCCTCAGCTCCAGCTCTTGGCATTTGCTTCTTCCTTCCGTCTGGCATATGTTTTCCTTGTACTTCAGGTATCAGTCTACATATTGCCTCCATCAAAAAGCCTACGTTATTGACTCAGAACTGGGATAGGTGTCCCTTCTGTGTGTTCCAGTAGTGCCCTGTCTTATACCTGTCATGATATCTGTGACTTTGTATGGAAATTGTATGTTTGTCTGTTTTTTTCAGATTATAGCATATGTTTGTTAGAGGTGGATCATATCATCTTCATCTTGTAATTCTAGTGCTTACTTTGCTCATGGTTGTTGAATAAATGAATGAAGAGTGAGAAAGCCAGAAGCTCTGATATTTAACCACAAGGATAATTAATTCAGTGTGCAACCATGGGCAAATTATATTTAATAGTAATATTGTATAATAGTTGTGCATACATATTTTTCTTTCTTATTAATACTGACAAAATTCTCAACTCTTTTACTGACTTCCACTTAGTTAACTATGAAATCTTTTAGGTAAGGAATATAATTCTTTCTTTTTCATTCTAG
Seq C2 exon
CTGCTGCTGAATTGGAATCTGGATCAATAGCTTCCCCTCTAGGGTCTACTGATGAGTCAAATCTAAATCAAGATCTAGTTTGGAAAGCATCAAGAGAATATGTACAGGTTTTAAAGAAAAATTATATGATCTGAAAGATAAGATTTTATTACTGGGCTGTTTATGTGACATTTTGTTTCTCATTAAATATTAATATATGACATGTAAAAATATTAAAGGAACGTATTTTTGTATCATATATGTCAGATCAAAATTTATATAGTATTTTAAACAATGTTACTTGGCTTCTTTAACTTTTAAGTGGATTTTGCCAATGAAAACCAGGAATATTGAGTTTTACATACTCAAACTGCCCAAATGTGAGCTGTTTAAACAGCCAAACCACTAAGTTGTCATTAATACTTTAGTGCAGTTAATTGATGGCTTATTTGTATTTTGTAATTTTTATCACTATATGTAGTGGTAGATGTCTAATTGGACTTAGACATCATTTTGTTGTGCAGGAACTGTGGTCATTGTTCATGTTTGGATGTATTACAATTGTTACAGTGCCATCAAATTTACATAATTTTAATTTTAAGCACTGATTTATATAGCTGTTCTCAGGGAGAAACAAGATTTGCCTGATTCACCTTTTCTGTTTGTTTATTTATTTTTAATTAACCTTTTGGAAATAGCCTTCAGTTTAGAGAAAATTTCGAAGTTTTAGTACAAAGACTTTCTCCTCCGAACAATTTGAGAGTAAATTGCTGACATTATGTCATCACCCCTGATTACTTTAGTGGGCATTCCTACAAGTCAGGACATTCTACATAACTACAGTGCAAACCTTGCAATCAGAAAGTCAACATTAATACATTCTAGTTTGTTACTTCTCTGTAATGTCCTTTATAGCAAAAGGATCCCATTCTAATCCATGGCTTGTATTTAGTTGTTGTATCTGTTAGATCTTTCAGTCTGGAACAGTTCCTCAGTCTTTCCTTGACCTTCATGACCTTGAATATTTTGAAGAGTAAAGTCTGGTAATATAAGAATGTCCCTCAATTGGGTTTCATGGTGATTAGATTTAGATTATATGATTTTTTGGCAGGAGTATCACAGAAGTGACCCAGTGATCTTCTCATTGCATCTTACCTGTGACCCTACAGTTTTGATTTGCCCTGTTACTGGTAATGTTAGCATTGATCACTAACAGTGGTATCTGCTGAATTTCTCCTCTGTAATGTTATTTTTTCACCTTGTGGTTAATTAGTATTTTACAGGGAGGTAATTTGAGACTATGTACATATCTCTACTCCCCATCGAACCCTCAATTTATTCATTTGCTTGTATCAAATAAACCATGGATTCATGGTTTATTTTATTCAGTGAGTTATAATTCATTAATATTGTTATTAAAAATTTGTTTTTCTTTTAAGAAATGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890:ENST00000376087:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=NA C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCAGGAGTTGGAAAAA
R:
CCACTTAAAAGTTAAAGAAGCCAAGT
Band lengths:
350-1543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development